Evidence map›Paper›PMID 25658332›Full record

ArticleBiochemistry2015

Conditional trimerization and lytic activity of HIV-1 gp41 variants containing the membrane-associated segments.

Zhou Dai, Yisong Tao, Nina Liu, Michael D Brenowitz, Mark E Girvin, Jonathan R Lai

Abstract read
In one paragraph

Article in Biochemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Peptides for Vaccine Development.ACS applied bio materials · 2022
    Review
  3. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Zhou DaiDepartment of Biochemistry, Albert Einstein College of Medicine , 1300 Morris Park Avenue, Bronx, New York 10461, United States.
Yisong Tao
Nina Liu
Michael D Brenowitz
Mark E Girvin
Jonathan R Lai

Funding

WORD PROCESSORP30CA013330 · NCI · YESHIVA UNIVERSITY · PI STEVEN C. ALMO · 1985 to 2026
$111.2M
Structural Analysis of Multidrug TransportR01GM072085 · NIGMS · ALBERT EINSTEIN COL OF MED YESHIVA UNIV · PI GIRVIN, MARK E. · 2004 to 2014
$2.7M
Targeting Viral Envelope Glycoproteins with Synthetic AntibodiesR01AI090249 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI LAI, JONATHAN R. · 2010 to 2014
$2.0M
NCI NIH HHS P30 CA013330NIAID NIH HHS AI090249NIAID NIH HHS R01 AI090249NIGMS NIH HHS GM072085NIGMS NIH HHS R01 GM072085
6 · The paper itself

Abstract

Fusion of host and viral membranes is a critical step during infection by membrane-bound viruses. The HIV-1 glycoproteins gp120 (surface subunit) and gp41 (fusion subunit) represent the prototypic system for studying this process; in the prevailing model, the gp41 ectodomain forms a trimeric six-helix bundle that constitutes a critical intermediate and provides the energetic driving force for overcoming barriers associated with membrane fusion. However, most structural studies of gp41 variants have been performed either on ectodomain constructs lacking one or more of the membrane-associated segments (the fusion peptide, FP, the membrane-proximal external region, MPER, and the transmembrane domain, TM) or on variants consisting of these isolated segments alone without the ectodomain. Several recent reports have suggested that the HIV-1 ectodomain, as well as larger construct containing the membrane-bound segments, dissociates from a trimer to a monomer in detergent micelles. Here we compare the properties of a series of gp41 variants to delineate the roles of the ectodomain, FP, and MPER and TM, all in membrane-mimicking environments. We find that these proteins are prone to formation of a monomer in detergent micelles. In one case, we observed exclusive monomer formation at pH 4 but conditional trimerization at pH 7 even at low micromolar (∼5 μM) protein concentrations. Liposome release assays demonstrate that these gp41-related proteins have the capacity to induce content leakage but that this activity is also strongly modulated by pH with much higher activity at pH 4. Circular dichroism, nuclear magnetic resonance, and binding assays with antibodies specific to the MPER provide insight into the structural and functional roles of the FP, MPER, and TM and their effect on structure within the larger context of the fusion subunit.

Indexed as

Protein MultimerizationCell MembraneHIV-1HIV Envelope Protein gp41Hydrogen-Ion ConcentrationMicellesProtein Structure, QuaternaryProtein Structure, SecondaryProtein Structure, TertiaryRecombinant Proteinsgp41 protein, Human immunodeficiency virus 1HIV Envelope Protein gp41MicellesRecombinant Proteins

Identifiers

PMID25658332
PMCPMC4348151

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.