Evidence map›Paper›PMID 25657614›Full record

ArticleBiological procedures online2015

Comparison of Vibratome and Compresstome sectioning of fresh primate lymphoid and genital tissues for in situ MHC-tetramer and immunofluorescence staining.

Hadia M Abdelaal, Hyeon O Kim, Reece Wagstaff, Ryoko Sawahata, Peter J Southern, Pamela J Skinner

Open access · goldAbstract read
In one paragraph

Article in Biological procedures online, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Detection of Antigen-Specific T Cells Using In Situ MHC Tetramer Staining.International journal of molecular sciences · 2019
    Review
  9. Article
  10. Article
  11. Reactive glia promote development of CD103Immunity, inflammation and disease · 2018
    Article
  12. Article
  13. Article
  14. Article
  15. Dynamics of SIV-specific CXCR5+ CD8 T cells during chronic SIV infection.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Hadia M AbdelaalDepartment of Veterinary and Biomedical Sciences, college of veterinary medicine, University of Minnesota, St. Paul, 1971 Commonwealth Avenue, Minnesota, MN 55108 USA ; Departments of Microbiology and Immunology, Faculty of Pharmacy, Zagazig University, Zagazig, 44519 Egypt.
Hyeon O KimDepartment of Veterinary and Biomedical Sciences, college of veterinary medicine, University of Minnesota, St. Paul, 1971 Commonwealth Avenue, Minnesota, MN 55108 USA.
Reece WagstaffDepartment of Veterinary and Biomedical Sciences, college of veterinary medicine, University of Minnesota, St. Paul, 1971 Commonwealth Avenue, Minnesota, MN 55108 USA.
Ryoko SawahataDepartment of Veterinary and Biomedical Sciences, college of veterinary medicine, University of Minnesota, St. Paul, 1971 Commonwealth Avenue, Minnesota, MN 55108 USA.
Peter J SouthernDepartments of Microbiology, MMC 196, University of Minnesota, 420 Delaware Street SE, Minneapolis, MN 55455 USA.
Pamela J SkinnerDepartment of Veterinary and Biomedical Sciences, college of veterinary medicine, University of Minnesota, St. Paul, 1971 Commonwealth Avenue, Minnesota, MN 55108 USA.
University of Minnesota · US

Funding

WNPRC Supplemental Request for Nonhuman Primate Enclosures to Equip HIV/AIDS-Related Research FacilitiesP51OD011106 · OD · UNIVERSITY OF WISCONSIN-MADISON · PI Dorota A. Grejner-Brzezinska · 2012 to 2026
$150.7M
VirologyU19AI095985 · NIAID · BETH ISRAEL DEACONESS MEDICAL CENTER · PI BAROUCH, DAN H. · 2011 to 2015
$35.9M
The Functional Significance of Cytotoxic T Lymphocyte EscapeR01AI052056 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI WATKINS, DAVID I · 2003 to 2024
$8.3M
Mechanisms Underlying Persistent Lentivirus Replication in Follicular T CellsR01AI096966 · NIAID · UNIVERSITY OF COLORADO DENVER · PI CONNICK, ELIZABETH, SKINNER, PAMELA J · 2013 to 2017
$4.2M
Impact of Extraordinarily Large Numbers of SIV-specific CD8 T Cells on Vaginal TrR01AI090732 · NIAID · UNIVERSITY OF MINNESOTA · PI HAASE, ASHLEY T., MASOPUST, DAVID · 2010 to 2013
$2.9M
CTL Exclusion from Lymphoid Follicles as a Mechanism of Lentivirus Immune InvasioR56AI080418 · NIAID · UNIVERSITY OF MINNESOTA · PI CONNICK, ELIZABETH, SKINNER, PAMELA J · 2010 to 2010
$750k
NIAID NIH HHS R01 AI090732NIAID NIH HHS R01 AI096966NIAID NIH HHS R56 AI080418NIAID NIH HHS U19 AI095985NIH HHS P51 OD011106
6 · The paper itself

Abstract

backgroundFor decades, the Vibratome served as a standard laboratory resource for sectioning fresh and fixed tissues. In skilled hands, high quality and consistent fresh unfixed tissue sections can be produced using a Vibratome but the sectioning procedure is extremely time consuming. In this study, we conducted a systematic comparison between the Vibratome and a new approach to section fresh unfixed tissues using a Compresstome. We used a Vibratome and a Compresstome to cut fresh unfixed lymphoid and genital non-human primate tissues then used in situ tetramer staining to label virus-specific CD8 T cells and immunofluorescent counter-staining to label B and T cells. We compared the Vibratome and Compresstome in five different sectioning parameters: speed of cutting, chilling capability, specimen stabilization, size of section, and section/staining quality.

resultsOverall, the Compresstome and Vibratome both produced high quality sections from unfixed spleen, lymph node, vagina, cervix, and uterus, and subsequent immunofluorescent staining was equivalent. The Compresstome however, offered distinct advantages; producing sections approximately 5 times faster than the Vibratome, cutting tissue sections more easily, and allowing production of larger sections.

conclusionsA Compresstome can be used to generate fresh unfixed primate lymph node, spleen, vagina, cervix and uterus sections, and is superior to a Vibratome in cutting these fresh tissues.

Indexed as

CervixCompresstomeImmunohistochemistryin situ tetramer stainingLymph nodeSpleenUnfixed fresh tissue sectioningUterusVaginaVibratome

Identifiers

PMID25657614
PMCPMC4318225
OpenAlexW2151778789

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.