Evidence map›Paper›PMID 25657010›Full record

ArticleThe Journal of biological chemistry2015

Roles of mRNA fate modulators Dhh1 and Pat1 in TNRC6-dependent gene silencing recapitulated in yeast.

Shiho Makino, Yuichiro Mishima, Kunio Inoue, Toshifumi Inada

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Identification ofFrontiers in microbiology · 2025
    Article
  2. Optical Control of MicroRNA Function in Zebrafish Embryos.Journal of the American Chemical Society · 2022
    Article
  3. Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Shiho MakinoFrom the Graduate School of Pharmaceutical Sciences, Tohoku University, Sendai 980-8578, Japan.
Yuichiro Mishimathe Institute of Molecular and Cellular Biosciences and the Department of Medical Genome Sciences, University of Tokyo, Bunkyo-ku, Tokyo 113-0032, Japan, and mishima@iam.u-tokyo.ac.jp.
Kunio Inouethe Graduate School of Science, Kobe University, Kobe 657-8501, Japan.
Toshifumi InadaFrom the Graduate School of Pharmaceutical Sciences, Tohoku University, Sendai 980-8578, Japan, tinada@m.tohoku.ac.jp.
Tohoku University · JPKobe University · JPThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The CCR4-NOT complex, the major deadenylase in eukaryotes, plays crucial roles in gene expression at the levels of transcription, mRNA decay, and protein degradation. GW182/TNRC6 proteins, which are core components of the microRNA-induced silencing complex in animals, stimulate deadenylation and repress translation via recruitment of the CCR4-NOT complex. Here we report a heterologous experimental system that recapitulates the recruitment of CCR4-NOT complex by TNRC6 in S. cerevisiae. Using this system, we characterize conserved functions of the CCR4-NOT complex. The complex stimulates degradation of mRNA from the 5' end by Xrn1, in a manner independent of both translation and deadenylation. This degradation pathway is probably conserved in miRNA-mediated gene silencing in zebrafish. Furthermore, the mRNA fate modulators Dhh1 and Pat1 redundantly stimulate mRNA decay, but both factors are required for poly(A) tail-independent translation repression by tethered TNRC6A. Our tethering-based reconstitution system reveals that the conserved architecture of Not1/CNOT1 provides a binding surface for TNRC6, thereby connecting microRNA-induced silencing complex to the decapping machinery as well as the translation apparatus.

Indexed as

AnimalsAutoantigensCell Cycle ProteinsDEAD-box RNA HelicasesEmbryo, NonmammalianGene Expression Regulation, FungalPolyadenylationProtein BiosynthesisRibonucleasesRNA-Binding ProteinsRNA, FungalRNA InterferenceRNA, MessengerRNA StabilitySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAutoantigensCCR4 protein, S cerevisiaeCDC39 protein, S cerevisiaeCell Cycle ProteinsDEAD-box RNA HelicasesDHH1 protein, S cerevisiaePAT1 protein, S cerevisiaeRibonucleasesRNA-Binding ProteinsRNA, FungalRNA, MessengerSaccharomyces cerevisiae ProteinsTNRC6A protein, zebrafishTranscription FactorsZebrafish ProteinsGene SilencingmiRNA MechanismmRNA DecayTranslation RegulationYeastZebrafish

Identifiers

PMID25657010
PMCPMC4375487
OpenAlexW2055709849

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.