Evidence map›Paper›PMID 25656184›Full record

ArticleAsian-Australasian journal of animal sciences2015

Characterization of the Fecal Microbial Communities of Duroc Pigs Using 16S rRNA Gene Pyrosequencing.

Edward Alain B Pajarillo, Jong Pyo Chae, Marilen P Balolong, Hyeun Bum Kim, Kang-Seok Seo, Dae-Kyung Kang

Abstract read
In one paragraph

Article in Asian-Australasian journal of animal sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Gut microbiota and meat quality.Frontiers in microbiology · 2022
    Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Edward Alain B PajarilloDepartment of Animal Resources Science, Dankook University, Cheonan 330-714, Korea.
Jong Pyo ChaeDepartment of Animal Resources Science, Dankook University, Cheonan 330-714, Korea.
Marilen P BalolongDepartment of Animal Resources Science, Dankook University, Cheonan 330-714, Korea ; Department of Biology, University of the Philippines Manila, Manila 1000, Philippines .
Hyeun Bum KimDepartment of Animal Resources Science, Dankook University, Cheonan 330-714, Korea.
Kang-Seok SeoDepartment of Animal Science and Technology, Sunchon National University, Suncheon 540-742, Korea .
Dae-Kyung KangDepartment of Animal Resources Science, Dankook University, Cheonan 330-714, Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study characterized the fecal bacterial community structure and inter-individual variation in 30-week-old Duroc pigs, which are known for their excellent meat quality. Pyrosequencing of the V1-V3 hypervariable regions of the 16S rRNA genes generated 108,254 valid reads and 508 operational taxonomic units at a 95% identity cut-off (genus level). Bacterial diversity and species richness as measured by the Shannon diversity index were significantly greater than those reported previously using denaturation gradient gel electrophoresis; thus, this study provides substantial information related to both known bacteria and the untapped portion of unclassified bacteria in the population. The bacterial composition of Duroc pig fecal samples was investigated at the phylum, class, family, and genus levels. Firmicutes and Bacteroidetes predominated at the phylum level, while Clostridia and Bacteroidia were most abundant at the class level. This study also detected prominent inter-individual variation starting at the family level. Among the core microbiome, which was observed at the genus level, Prevotella was consistently dominant, as well as a bacterial phylotype related to Oscillibacter valericigenes, a valerate producer. This study found high bacterial diversity and compositional variation among individuals of the same breed line, as well as high abundance of unclassified bacterial phylotypes that may have important functions in the growth performance of Duroc pigs.

Indexed as

16S rRNA GeneDurocFecal MicrobiotaPigsPyrosequencing

Identifiers

PMID25656184
PMCPMC4341109

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.