Evidence map›Paper›PMID 25656091›Full record

ArticleNature communications2015

Ultrasensitive quantification of TAP-dependent antigen compartmentalization in scarce primary immune cell subsets.

Hanna Fischbach, Marius Döring, Daphne Nikles, Elisa Lehnert, Christoph Baldauf, Ulrich Kalinke, Robert Tampé

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 37 citations in OpenAlex.

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  15. Efficient Amber SuppressionACS synthetic biology · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Hanna FischbachInstitute of Biochemistry, Biocenter, Goethe-University Frankfurt, Max-von-Laue Str. 9, 60438 Frankfurt/Main, Germany.
Marius DöringInstitute for Experimental Infection Research, TWINCORE, Centre for Experimental and Clinical Infection Research, a joint venture between the Helmholtz-Centre for Infection Research and the Hannover Medical School, Feodor-Lynen Str. 7-9, 30625 Hannover, Germany.
Daphne NiklesInstitute of Biochemistry, Biocenter, Goethe-University Frankfurt, Max-von-Laue Str. 9, 60438 Frankfurt/Main, Germany.
Elisa LehnertInstitute of Biochemistry, Biocenter, Goethe-University Frankfurt, Max-von-Laue Str. 9, 60438 Frankfurt/Main, Germany.
Christoph BaldaufInstitute of Biochemistry, Biocenter, Goethe-University Frankfurt, Max-von-Laue Str. 9, 60438 Frankfurt/Main, Germany.
Ulrich KalinkeInstitute for Experimental Infection Research, TWINCORE, Centre for Experimental and Clinical Infection Research, a joint venture between the Helmholtz-Centre for Infection Research and the Hannover Medical School, Feodor-Lynen Str. 7-9, 30625 Hannover, Germany.
Robert Tampé1] Institute of Biochemistry, Biocenter, Goethe-University Frankfurt, Max-von-Laue Str. 9, 60438 Frankfurt/Main, Germany [2] Cluster of Excellence Frankfurt - Macromolecular Complexes, Goethe-University Frankfurt, Max-von-Laue Str. 9, 60438 Frankfurt/Main, Germany.
Goethe University Frankfurt · DEHelmholtz Centre for Infection Research · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Presentation of peptides on major histocompatibility complex class I (MHC I) is essential for the establishment and maintenance of self-tolerance, priming of antigen-specific CD8(+) T cells and the exertion of several T-cell effector functions. Cytosolic proteasomes continuously degrade proteins into peptides, which are actively transported across the endoplasmic reticulum (ER) membrane by the transporter associated with antigen processing (TAP). In the ER lumen antigenic peptides are loaded onto MHC I, which is displayed on the cell surface. Here we describe an innovative flow cytometric approach to monitor time-resolved ER compartmentalization of antigenic peptides. This assay allows the analysis of distinct primary human immune cell subsets at reporter peptide concentrations of 1 nM. Thus, this ultrasensitive method for the first time permits quantification of TAP activity under close to physiological conditions in scarce primary cell subsets such as antigen cross-presenting dendritic cells.

Indexed as

Cell CompartmentationAntigensATP-Binding Cassette TransportersComputer SystemsEndoplasmic ReticulumFlow CytometryHerpesvirus 1, BovineHumansLymphocyte SubsetsProtein TransportViral ProteinsAntigensATP-Binding Cassette Transporterstransporter associated with antigen processing (TAP)Viral Proteins

Identifiers

PMID25656091
PMCPMC4347055
OpenAlexW2156990811

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.