Evidence map›Paper›PMID 25655076›Full record

ArticleBMC cell biology2015

Hydrophobicity of protein determinants influences the recognition of substrates by EDEM1 and EDEM2 in human cells.

Iwona Sokołowska, Ewa S Piłka, Kirsten Sandvig, Grzegorz Węgrzyn, Monika Słomińska-Wojewódzka

Open access · goldAbstract read
In one paragraph

Article in BMC cell biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 35 citations in OpenAlex.

  1. N-glycan-dependent protein maturation and quality control in the ER.Nature reviews. Molecular cell biology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

Iwona Sokołowska
Ewa S Piłka
Kirsten Sandvig
Grzegorz Węgrzyn
Monika Słomińska-Wojewódzka
University of Gdańsk · PLEvotec (United Kingdom) · GBNorwegian Cancer Society · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundEDEM1 and EDEM2 are crucial regulators of the endoplasmic reticulum (ER)-associated degradation (ERAD) that extracts misfolded glycoproteins from the calnexin chaperone system. The degradation of ERAD substrates involves mannose trimming of N-linked glycans; however the precise mechanism of substrate recognition and sorting to the ERAD pathway is still poorly understood. It has previously been demonstrated that EDEM1 and EDEM2 binding does not require the trimming of substrate glycans or even ERAD substrate glycosylation, thus suggesting that both chaperones probably recognize misfolded regions of aberrant proteins.

resultsIn this work, we focused on the substrate recognition by EDEM1 and EDEM2, asking whether hydrophobicity of protein determinants might be important for these interactions in human cells. In the study we used ricin, a protein toxin that utilizes the ERAD pathway in its retrotranslocation from the ER to the cytosol, and a model misfolded protein, the pancreatic isoform of human β-secretase, BACE457. Mutations in the hydrophobic regions of these proteins allowed us to obtain mutated forms with increased and decreased hydrophobicity.

conclusionsOur data provide the first evidence that recognition of ERAD substrates by EDEM1 and EDEM2 might be determined by a sufficiently high hydrophobicity of protein determinants. Moreover, EDEM proteins can bind hydrophobic transmembrane regions of misfolded ERAD substrates. These data contribute to the general understanding of the regulation of ERAD in mammalian cells.

Indexed as

alpha-MannosidaseAmino Acid SequenceAmyloid Precursor Protein SecretasesCircular DichroismCytosolEndoplasmic ReticulumGlycoproteinsGolgi ApparatusHEK293 CellsHumansHydrophobic and Hydrophilic InteractionsMembrane ProteinsMolecular Sequence DataMutagenesisProtein BindingProtein Denaturationalpha-MannosidaseAmyloid Precursor Protein SecretasesEDEM1 protein, humanEDEM2 protein, humanGlycoproteinsMembrane ProteinsRicin

Identifiers

PMID25655076
PMCPMC4340280
OpenAlexW2106295023

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.