Evidence map›Paper›PMID 25654734›Full record

ArticleACS chemical biology2015

Peptide library approach to uncover phosphomimetic inhibitors of the BRCA1 C-terminal domain.

E Railey White, Luxin Sun, Zhong Ma, Jason M Beckta, Brittany A Danzig, David E Hacker, Melissa Huie, David C Williams, Ross A Edwards, Kristoffer Valerie and 2 more

Open access · greenAbstract read
In one paragraph

Article in ACS chemical biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 41 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Anti-cancer peptide-based therapeutic strategies in solid tumors.Cellular & molecular biology letters · 2022
    Article
  8. Non-canonical Amino Acid Substrates of E. coli Aminoacyl-tRNA Synthetases.Chembiochem : a European journal of chemical biology · 2022
    Review
  9. Article
  10. Article
  11. Biosynthetic Strategies for Macrocyclic Peptides.Molecules (Basel, Switzerland) · 2021
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. ACS synthetic biology · 2020
    Review
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

E Railey White†Department of Chemistry, Virginia Commonwealth University (VCU), 1001 West Main Street, P.O. Box 842006, Richmond, Virginia 23284, United States.
Luxin Sun⊥Department of Biochemistry, University of Alberta, Edmonton, Alberta T6G 2H7, Canada.
Zhong Ma
Jason M Beckta
Brittany A Danzig†Department of Chemistry, Virginia Commonwealth University (VCU), 1001 West Main Street, P.O. Box 842006, Richmond, Virginia 23284, United States.
David E Hacker†Department of Chemistry, Virginia Commonwealth University (VCU), 1001 West Main Street, P.O. Box 842006, Richmond, Virginia 23284, United States.
Melissa Huie
David C Williams
Ross A Edwards⊥Department of Biochemistry, University of Alberta, Edmonton, Alberta T6G 2H7, Canada.
Kristoffer Valerie
J N Mark Glover⊥Department of Biochemistry, University of Alberta, Edmonton, Alberta T6G 2H7, Canada.
Matthew C T Hartman†Department of Chemistry, Virginia Commonwealth University (VCU), 1001 West Main Street, P.O. Box 842006, Richmond, Virginia 23284, United States.
Virginia Commonwealth University · USUniversity of Alberta · CA

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI John A. Tainer · 2001 to 2026
$89.6M
ATM as target for malignant glioma radiosensitization.R01NS064593 · NINDS · VIRGINIA COMMONWEALTH UNIVERSITY · PI VALERIE, KRISTOFFER CARL · 2009 to 2013
$1.7M
XLF in double-strand break repair and chemo/radiosensitizationR01CA166264 · NCI · VIRGINIA COMMONWEALTH UNIVERSITY · PI HARTMAN, MATTHEW C · 2013 to 2017
$1.5M
Targeting invasion and DNA DSB repair in glioma with a multi-pronged approach.R21CA156995 · NCI · VIRGINIA COMMONWEALTH UNIVERSITY · PI VALERIE, KRISTOFFER CARL · 2011 to 2012
$358k
ATM Controls Genomic Stability in Pluripotent Stem CellsF30CA171893 · NCI · VIRGINIA COMMONWEALTH UNIVERSITY · PI BECKTA, JASON MARK · 2012 to 2014
$101k
NCI NIH HHS CA92584NCI NIH HHS F30 CA171893NCI NIH HHS F30CA171893NCI NIH HHS P01 CA092584NCI NIH HHS R01 CA166264NCI NIH HHS R01CA166264NCI NIH HHS R21 CA156995NCI NIH HHS R21CA156995NINDS NIH HHS R01 NS064593NINDS NIH HHS R01NS064593
6 · The paper itself

Abstract

Many intracellular protein-protein interactions are mediated by the phosphorylation of serine, and phosphoserine-containing peptides can inhibit these interactions. However, hydrolysis of the phosphate by phosphatases, and the poor cell permeability associated with phosphorylated peptides has limited their utility in cellular and in vivo contexts. Compounding the problem, strategies to replace phosphoserine in peptide inhibitors with easily accessible mimetics (such as Glu or Asp) routinely fail. Here, we present an in vitro selection strategy for replacement of phosphoserine. Using mRNA display, we created a 10 trillion member structurally diverse unnatural peptide library. From this library, we found a peptide that specifically binds to the C-terminal domain (BRCT)2 of breast cancer associated protein 1 (BRCA1) with an affinity comparable to phosphorylated peptides. A crystal structure of the peptide bound reveals that the pSer-x-x-Phe motif normally found in BRCA1 (BRCT)2 binding partners is replaced by a Glu-x-x-4-fluoroPhe and that the peptide picks up additional contacts on the protein surface not observed in cognate phosphopeptide binding. Expression of the peptide in human cells led to defects in DNA repair by homologous recombination, a process BRCA1 is known to coordinate. Overall, this work validates a new in vitro selection approach for the development of inhibitors of protein-protein interactions mediated by serine phosphorylation.

Indexed as

Molecular MimicryPeptide LibraryAmino Acid SequenceBRCA1 ProteinCrystallography, X-RayDNA DamageHumansModels, MolecularMolecular Sequence DataPhosphorylationSequence Homology, Amino AcidSerineBRCA1 ProteinBRCA1 protein, humanPeptide LibrarySerine

Identifiers

PMID25654734
PMCPMC4433557
OpenAlexW2027652921

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.