Evidence map›Paper›PMID 25654111›Full record

ArticleBioMed research international2015

A whole-genome microarray study of Arabidopsis thaliana semisolid callus cultures exposed to microgravity and nonmicrogravity related spaceflight conditions for 5 days on board of Shenzhou 8.

Svenja Fengler, Ina Spirer, Maren Neef, Margret Ecke, Kay Nieselt, Rüdiger Hampp

Abstract read
In one paragraph

Article in BioMed research international, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Life (Basel, Switzerland) · 2023
    Article
  6. Review
  7. Article
  8. From Spaceflight to MarsInternational journal of molecular sciences · 2021
    Article
  9. Article
  10. Test ofFrontiers in plant science · 2020
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Svenja FenglerPhysiological Ecology of Plants, University of Tübingen, Auf der Morgenstelle 1, 72076 Tübingen, Germany.ORCID 0000-0003-3569-034X
Ina SpirerPhysiological Ecology of Plants, University of Tübingen, Auf der Morgenstelle 1, 72076 Tübingen, Germany.ORCID 0000-0002-8770-4486
Maren NeefPhysiological Ecology of Plants, University of Tübingen, Auf der Morgenstelle 1, 72076 Tübingen, Germany.
Margret EckePhysiological Ecology of Plants, University of Tübingen, Auf der Morgenstelle 1, 72076 Tübingen, Germany.
Kay NieseltCenter for Bioinformatics, University of Tübingen, Sand 14, 72076 Tübingen, Germany.ORCID 0000-0002-1283-7065
Rüdiger HamppPhysiological Ecology of Plants, University of Tübingen, Auf der Morgenstelle 1, 72076 Tübingen, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Simbox mission was the first joint space project between Germany and China in November 2011. Eleven-day-old Arabidopsis thaliana wild type semisolid callus cultures were integrated into fully automated plant cultivation containers and exposed to spaceflight conditions within the Simbox hardware on board of the spacecraft Shenzhou 8. The related ground experiment was conducted under similar conditions. The use of an in-flight centrifuge provided a 1 g gravitational field in space. The cells were metabolically quenched after 5 days via RNAlater injection. The impact on the Arabidopsis transcriptome was investigated by means of whole-genome gene expression analysis. The results show a major impact of nonmicrogravity related spaceflight conditions. Genes that were significantly altered in transcript abundance are mainly involved in protein phosphorylation and MAPK cascade-related signaling processes, as well as in the cellular defense and stress responses. In contrast to short-term effects of microgravity (seconds, minutes), this mission identified only minor changes after 5 days of microgravity. These concerned genes coding for proteins involved in the plastid-associated translation machinery, mitochondrial electron transport, and energy production.

Indexed as

Genome, PlantSpacecraftSpace FlightWeightlessnessArabidopsisCluster AnalysisGene Expression ProfilingGene Expression Regulation, PlantGene OntologyGenes, PlantOligonucleotide Array Sequence AnalysisTemperatureTissue Culture Techniques

Identifiers

PMID25654111
PMCPMC4309294

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.