ArticleMetabolomics : Official journal of the Metabolomic Society
Standard reporting requirements for biological samples in metabolomics experiments: microbial and in vitro biology experiments.
Article in Metabolomics : Official journal of the Metabolomic Society. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed, 58 citations in OpenAlex.
- High-resolution metabolomics of maternal polybrominated diphenyl ethers (PBDE) exposure and preterm birth in the Atlanta African American Maternal-Child Cohort.Communications medicine · 2026Article
- Research progress on metabolic abnormalities in myocardial hypertrophy.Frontiers in cardiovascular medicine · 2026Review
- Maternal metabolomic signatures for risk of preterm and early term birth in African American women.Nature health · 2026Article
- Discovery of metabolite biomarkers for cerebral ischemia-reperfusion injury based on metabolomics: neurotoxic mechanism and functional validation of a flavopiridol -related metabolite.Frontiers in molecular biosciences · 2026Article
- Toxicological analysis of metabolites in ischemic stroke based on salivary metabolomics.Frontiers in molecular biosciences · 2025Article
- Non-targeted metabolomics and associations with per- and polyfluoroalkyl substances (PFAS) exposure in humans: A scoping review.Environment international · 2022Article
- A Checklist for Reproducible Computational Analysis in Clinical Metabolomics Research.Metabolites · 2022Review
- Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices.Nature methods · 2021Review
- Tick-Tock Consider the Clock: The Influence of Circadian and External Cycles on Time of Day Variation in the Human Metabolome-A Review.Metabolites · 2021Review
- Article
- Secreted Metabolome of Human Macrophages Exposed to Methamphetamine.Analytical chemistry · 2019Article
- Use cases, best practice and reporting standards for metabolomics in regulatory toxicology.Nature communications · 2019Review
- Experimental design and reporting standards for metabolomics studies of mammalian cell lines.Cellular and molecular life sciences : CMLS · 2017Review
- Critical review of reporting of the data analysis step in metabolomics.Metabolomics : Official journal of the Metabolomic Society · 2017Article
- Compliance with minimum information guidelines in public metabolomics repositories.Scientific data · 2017Article
- A decade after the metabolomics standards initiative it's time for a revision.Scientific data · 2017Article
- Mass spectrometry as a quantitative tool in plant metabolomics.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2016Review
- Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools.Nucleic acids research · 2016Article
- Measures for interoperability of phenotypic data: minimum information requirements and formatting.Plant methods · 2016Article
- A role for vaccinia virus protein C16 in reprogramming cellular energy metabolism.The Journal of general virology · 2015Article
Corrections and comments
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Authors and funding
12 authors at 11 institutions in 9 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
With the increasing use of metabolomics as a means to study a large number of different biological research questions, there is a need for a minimal set of reporting standards that allow the scientific community to evaluate, understand, repeat, compare and re-investigate metabolomics studies. Here we propose, a first draft of minimal requirements to effectively describe the biological context of metabolomics studies that involve microbial or in vitro biological subjects. This recommendation has been produced by the microbiology and in vitro biology working subgroup of the Metabolomics Standards Initiative in collaboration with the yeast systems biology network as part of a wider standardization initiative led by the Metabolomics Society. Microbial and in vitro biology metabolomics is defined by this sub-working group as studies with any cell or organism that require a defined external medium to facilitate growth and propagation. Both a minimal set and a best practice set of reporting standards for metabolomics experiments have been defined. The minimal set of reporting standards for microbial or in vitro biology metabolomics experiments includes those factors that are
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.