Evidence map›Paper›PMID 25653358›Full record

ArticleThe Journal of neuroscience : the official journal of the Society for Neuroscience2015

A short splice form of Xin-actin binding repeat containing 2 (XIRP2) lacking the Xin repeats is required for maintenance of stereocilia morphology and hearing function.

Shimon P Francis, Jocelyn F Krey, Evan S Krystofiak, Runjia Cui, Sonali Nanda, Wenhao Xu, Bechara Kachar, Peter G Barr-Gillespie, Jung-Bum Shin

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of neuroscience : the official journal of the Society for Neuroscience, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 44 citations in OpenAlex.

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  11. Mitochondria-localized AMPK responds to local energetics and contributes to exercise and energetic stress-induced mitophagy.Proceedings of the National Academy of Sciences of the United States of America · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Shimon P FrancisDepartments of Neuroscience.
Jocelyn F KreyOregon Hearing Research Center & Vollum Institute, Oregon Health & Science University, Portland, Oregon 97239, and.
Evan S KrystofiakNational Institute for Deafness and Communications Disorders, National Institute of Health, Bethesda, Maryland 20892.
Runjia CuiNational Institute for Deafness and Communications Disorders, National Institute of Health, Bethesda, Maryland 20892.
Sonali NandaDepartments of Neuroscience.
Wenhao XuGene Targeting and Transgenic Facility, University of Virginia, Charlottesville, Virginia 22908.
Bechara KacharNational Institute for Deafness and Communications Disorders, National Institute of Health, Bethesda, Maryland 20892.
Peter G Barr-GillespieOregon Hearing Research Center & Vollum Institute, Oregon Health & Science University, Portland, Oregon 97239, and.ORCID http://orcid.org/0000-0002-9787-5860
Jung-Bum ShinDepartments of Neuroscience, Brain, Immunology, and Glia Center, and js2ee@virginia.edu.
National Institute on Deafness and Other Communication Disorders · USOregon Health & Science University · USAllen Institute for Brain Science · USTarget (United States) · US

Funding

Structural and Molecular Basis of Transduction in Auditory Sensory OrgansZIADC000002 · NIDCD · NATIONAL INSTITUTE ON DEAFNESS AND OTHER COMMUNICATION DISORDERS · PI KACHAR, BECHARA · 2009 to 2025
$38.3M
Hair-Bundle ProteinsR01DC002368 · NIDCD · OREGON HEALTH & SCIENCE UNIVERSITY · PI Peter Gordon Barr-Gillespie · 1994 to 2026
$11.3M
PORTLAND AREA COMMUNICATION RESEARCH CORE CENTERP30DC005983 · NIDCD · OREGON HEALTH & SCIENCE UNIVERSITY · PI BARR-GILLESPIE, PETER GORDON · 2003 to 2017
$9.0M
Hair Bundle Structure and DynamicsR01DC011034 · NIDCD · OREGON HEALTH & SCIENCE UNIVERSITY · PI BARR-GILLESPIE, PETER GORDON · 2010 to 2024
$6.4M
Molecular organization of intercellular junctions in the inner earZIADC000009 · NIDCD · NATIONAL INSTITUTE ON DEAFNESS AND OTHER COMMUNICATION DISORDERS · PI KACHAR, BECHARA · 2012 to 2020
$5.5M
Role of XIRP2 in hair cell function and degenerationR01DC014254 · NIDCD · UNIVERSITY OF VIRGINIA · PI SHIN, JUNG-BUM · 2015 to 2019
$1.7M
Dynamics of Hair Bundle ProteinsR00DC009412 · NIDCD · UNIVERSITY OF VIRGINIA · PI SHIN, JUNG-BUM · 2010 to 2012
$725k
JSM-7001 FTTLS Scanning Electron MicroscopeS10OD011966 · OD · UNIVERSITY OF VIRGINIA · PI CORWIN, JEFFREY T · 2012 to 2012
$532k
Dynamics of Hair Bundle ProteinsK99DC009412 · NIDCD · OREGON HEALTH & SCIENCE UNIVERSITY · PI SHIN, JUNG-BUM · 2008 to 2009
$180k
NIDCD NIH HHS K99 DC009412NIDCD NIH HHS K99/R00 DC009412NIDCD NIH HHS P30 DC005983NIDCD NIH HHS R00 DC009412NIDCD NIH HHS R01 DC002368NIDCD NIH HHS R01 DC011034NIDCD NIH HHS R01 DC014254NIH HHS S10 OD011966
6 · The paper itself

Abstract

Approximately one-third of known deafness genes encode proteins located in the hair bundle, the sensory hair cell's mechanoreceptive organelle. In previous studies, we used mass spectrometry to characterize the hair bundle's proteome, resulting in the discovery of novel bundle proteins. One such protein is Xin-actin binding repeat containing 2 (XIRP2), an actin-cross-linking protein previously reported to be specifically expressed in striated muscle. Because mutations in other actin-cross-linkers result in hearing loss, we investigated the role of XIRP2 in hearing function. In the inner ear, XIRP2 is specifically expressed in hair cells, colocalizing with actin-rich structures in bundles, the underlying cuticular plate, and the circumferential actin belt. Analysis using peptide mass spectrometry revealed that the bundle harbors a previously uncharacterized XIRP2 splice variant, suggesting XIRP2's role in the hair cell differs significantly from that reported in myocytes. To determine the role of XIRP2 in hearing, we applied clustered regularly interspaced short palindromic repeat (CRISPR)/Cas9-mediated genome-editing technology to induce targeted mutations into the mouse Xirp2 gene, resulting in the elimination of XIRP2 protein expression in the inner ear. Functional analysis of hearing in the resulting Xirp2-null mice revealed high-frequency hearing loss, and ultrastructural scanning electron microscopy analyses of hair cells demonstrated stereocilia degeneration in these mice. We thus conclude that XIRP2 is required for long-term maintenance of hair cell stereocilia, and that its dysfunction causes hearing loss in the mouse.

Indexed as

HearingAnimalsCells, CulturedChick EmbryoCytoskeletal ProteinsDNA-Binding ProteinsHair Cells, AuditoryHearing LossLIM Domain ProteinsMiceMice, Inbred C57BLMice, Inbred CBANuclear ProteinsProtein IsoformsProtein TransportRatsCytoskeletal ProteinsDNA-Binding ProteinsLIM Domain ProteinsNuclear ProteinsProtein IsoformsXIRP2 protein, mouseCRISPRhair bundlehair cellhearingstereociliaXIRP2

Identifiers

PMID25653358
PMCPMC4315831
OpenAlexW2005032043

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.