Evidence map›Paper›PMID 25653337›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Cross-talk and regulatory interactions between the essential response regulator RpaB and cyanobacterial circadian clock output.

Javier Espinosa, Joseph S Boyd, Raquel Cantos, Paloma Salinas, Susan S Golden, Asuncion Contreras

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

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  11. Journal of bacteriology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Javier EspinosaDepartamento de Fisiología, Genética y Microbiología, Universidad de Alicante, 03080 Alicante, Spain; and Center for Circadian Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA 92093.
Joseph S BoydCenter for Circadian Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA 92093.
Raquel CantosDepartamento de Fisiología, Genética y Microbiología, Universidad de Alicante, 03080 Alicante, Spain; and.
Paloma SalinasDepartamento de Fisiología, Genética y Microbiología, Universidad de Alicante, 03080 Alicante, Spain; and.
Susan S GoldenCenter for Circadian Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA 92093 sgolden@ucsd.edu contrera@ua.es.
Asuncion ContrerasDepartamento de Fisiología, Genética y Microbiología, Universidad de Alicante, 03080 Alicante, Spain; and sgolden@ucsd.edu contrera@ua.es.

Funding

THE PATHWAY THAT SETS THE CYANOBACTERIAL CIRCADIAN CLOCKR01GM062419 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GOLDEN, SUSAN S · 2001 to 2015
$3.9M
NIGMS NIH HHS R01 GM062419NIGMS NIH HHS R01GM062419
6 · The paper itself

Abstract

The response regulator RpaB (regulator of phycobilisome associated B), part of an essential two-component system conserved in cyanobacteria that responds to multiple environmental signals, has recently been implicated in the control of cell dimensions and of circadian rhythms of gene expression in the model cyanobacterium Synechococcus elongatus PCC 7942. However, little is known of the molecular mechanisms that underlie RpaB functions. In this study we show that the regulation of phenotypes by RpaB is intimately connected with the activity of RpaA (regulator of phycobilisome associated A), the master regulator of circadian transcription patterns. RpaB affects RpaA activity both through control of gene expression, a function requiring an intact effector domain, and via altering RpaA phosphorylation, a function mediated through the N-terminal receiver domain of RpaB. Thus, both phosphorylation cross-talk and coregulation of target genes play a role in the genetic interactions between the RpaA and RpaB pathways. In addition, RpaB∼P levels appear critical for survival under light:dark cycles, conditions in which RpaB phosphorylation is environmentally driven independent of the circadian clock. We propose that the complex regulatory interactions between the essential and environmentally sensitive NblS-RpaB system and the SasA-RpaA clock output system integrate relevant extra- and intracellular signals to the circadian clock.

Indexed as

Circadian RhythmBacterial ProteinsCyanobacteriaGenes, BacterialPhosphorylationBacterial Proteinschronobiologysignaling networktranscription regulation

Identifiers

PMID25653337
PMCPMC4343135

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.