Evidence map›Paper›PMID 25653165›Full record

ArticleNucleic acids research2015

Structural and functional characterization of a cell cycle associated HDAC1/2 complex reveals the structural basis for complex assembly and nucleosome targeting.

Toshimasa Itoh, Louise Fairall, Frederick W Muskett, Charles P Milano, Peter J Watson, Nadia Arnaudo, Almutasem Saleh, Christopher J Millard, Mohammed El-Mezgueldi, Fabrizio Martino and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 62 citations in OpenAlex.

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  7. Emerging Role of SMILE in Liver Metabolism.International journal of molecular sciences · 2023
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  14. Pharmacogenomics and personalized medicine · 2022
    Article
  15. Article
  16. Article
  17. Article
  18. Structure-Based Inhibitor Discovery of Class I Histone Deacetylases (HDACs).International journal of molecular sciences · 2020
    Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Toshimasa ItohHenry Wellcome Laboratories of Structural Biology, Department of Biochemistry, University of Leicester, Lancaster Road, Leicester LE1 9HN, UK.
Louise FairallHenry Wellcome Laboratories of Structural Biology, Department of Biochemistry, University of Leicester, Lancaster Road, Leicester LE1 9HN, UK.
Frederick W MuskettHenry Wellcome Laboratories of Structural Biology, Department of Biochemistry, University of Leicester, Lancaster Road, Leicester LE1 9HN, UK.
Charles P MilanoHenry Wellcome Laboratories of Structural Biology, Department of Biochemistry, University of Leicester, Lancaster Road, Leicester LE1 9HN, UK.
Peter J WatsonHenry Wellcome Laboratories of Structural Biology, Department of Biochemistry, University of Leicester, Lancaster Road, Leicester LE1 9HN, UK.
Nadia ArnaudoMRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge Biomedical Campus, Cambridge CB2 0QH, UK.
Almutasem SalehHenry Wellcome Laboratories of Structural Biology, Department of Biochemistry, University of Leicester, Lancaster Road, Leicester LE1 9HN, UK.
Christopher J MillardHenry Wellcome Laboratories of Structural Biology, Department of Biochemistry, University of Leicester, Lancaster Road, Leicester LE1 9HN, UK.
Mohammed El-MezgueldiHenry Wellcome Laboratories of Structural Biology, Department of Biochemistry, University of Leicester, Lancaster Road, Leicester LE1 9HN, UK.
Fabrizio MartinoMRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge Biomedical Campus, Cambridge CB2 0QH, UK.
John W R SchwabeHenry Wellcome Laboratories of Structural Biology, Department of Biochemistry, University of Leicester, Lancaster Road, Leicester LE1 9HN, UK john.schwabe@le.ac.uk.
University of Leicester · GBMRC Laboratory of Molecular Biology · GB

Funding

Medical Research Council MC_PC_14117Medical Research Council MC_U105184333Wellcome Trust 085408Wellcome Trust 100237Wellcome Trust 100237/Z/12/Z
6 · The paper itself

Abstract

Recent proteomic studies have identified a novel histone deacetylase complex that is upregulated during mitosis and is associated with cyclin A. This complex is conserved from nematodes to man and contains histone deacetylases 1 and 2, the MIDEAS corepressor protein and a protein called DNTTIP1 whose function was hitherto poorly understood. Here, we report the structures of two domains from DNTTIP1. The amino-terminal region forms a tight dimerization domain with a novel structural fold that interacts with and mediates assembly of the HDAC1:MIDEAS complex. The carboxy-terminal domain of DNTTIP1 has a structure related to the SKI/SNO/DAC domain, despite lacking obvious sequence homology. We show that this domain in DNTTIP1 mediates interaction with both DNA and nucleosomes. Thus, DNTTIP1 acts as a dimeric chromatin binding module in the HDAC1:MIDEAS corepressor complex.

Indexed as

Carrier ProteinsCell CycleCo-Repressor ProteinsDNADNA-Binding ProteinsHEK293 CellsHistone Deacetylase 1Histone Deacetylase 2HumansModels, MolecularNuclear ProteinsNucleosomesProtein BindingProtein Interaction Domains and MotifsProtein MultimerizationProtein Structure, TertiaryCarrier ProteinsCo-Repressor ProteinsDNADNA-Binding ProteinsDNTTIP1 protein, humanHDAC1 protein, humanHistone Deacetylase 1Histone Deacetylase 2MIDEAS protein, humanNuclear ProteinsNucleosomesTranscription Factors

Identifiers

PMID25653165
PMCPMC4344507
OpenAlexW2153580557

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.