Evidence map›Paper›PMID 25653158›Full record

ArticleNucleic acids research2015

Stable heteroplasmy at the single-cell level is facilitated by intercellular exchange of mtDNA.

Anitha D Jayaprakash, Erica K Benson, Swapna Gone, Raymond Liang, Jaehee Shim, Luca Lambertini, Masoud M Toloue, Mike Wigler, Stuart A Aaronson, Ravi Sachidanandam

Abstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Anitha D JayaprakashDepartment of Oncological Sciences, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, NY 10029, USA.
Erica K BensonDepartment of Oncological Sciences, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, NY 10029, USA.
Swapna GoneBioo Scientific Corporation, 7050 Burleson Road, Austin, TX 78744, USA.
Raymond LiangDepartment of Oncological Sciences, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, NY 10029, USA.
Jaehee ShimDepartment of Oncological Sciences, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, NY 10029, USA.
Luca LambertiniDepartment of Preventive Medicine and Department of Obstetrics, Gynecology and Reproductive Science, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, NY 10029, USA.
Masoud M ToloueBioo Scientific Corporation, 7050 Burleson Road, Austin, TX 78744, USA.
Mike WiglerCold Spring Harbor Laboratory, One Bungtown Road, Cold Spring Harbor, NY 11724, USA.
Stuart A AaronsonDepartment of Oncological Sciences, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, NY 10029, USA.
Ravi SachidanandamDepartment of Oncological Sciences, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, NY 10029, USA ravi.mssm@gmail.com.

Funding

PW1--A mediator of cell survival by NFKB and cell death by p53P01CA080058 · NCI · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI AARONSON, STUART A · 2000 to 2016
$20.2M
Defining mechanisms and targets in Wnt addicted human malignancies (PQ22)R01CA170702 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI AARONSON, STUART A · 2012 to 2015
$1.4M
Sensor-seq: A genome-wide biological measure of microRNA activity.R33CA182377 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI BROWN, BRIAN D, SACHIDANANDAM, RAVI · 2013 to 2015
$1.0M
Rapid and inexpensive epi/genetic profiling of the human mitochondrial genomeR21HG007394 · NHGRI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SACHIDANANDAM, RAVI · 2013 to 2014
$465k
NCI NIH HHS P01 CA080058NCI NIH HHS R01 CA170702NCI NIH HHS R33 CA182377NHGRI NIH HHS 1R21HG007394-01NHGRI NIH HHS R21 HG007394
6 · The paper itself

Abstract

Eukaryotic cells carry two genomes, nuclear (nDNA) and mitochondrial (mtDNA), which are ostensibly decoupled in their replication, segregation and inheritance. It is increasingly appreciated that heteroplasmy, the occurrence of multiple mtDNA haplotypes in a cell, plays an important biological role, but its features are not well understood. Accurately determining the diversity of mtDNA has been difficult, due to the relatively small amount of mtDNA in each cell (<1% of the total DNA), the intercellular variability of mtDNA content and mtDNA pseudogenes (Numts) in nDNA. To understand the nature of heteroplasmy, we developed Mseek, a novel technique to purify and sequence mtDNA. Mseek yields high purity (>90%) mtDNA and its ability to detect rare variants is limited only by sequencing depth, providing unprecedented sensitivity and specificity. Using Mseek, we confirmed the ubiquity of heteroplasmy by analyzing mtDNA from a diverse set of cell lines and human samples. Applying Mseek to colonies derived from single cells, we find heteroplasmy is stably maintained in individual daughter cells over multiple cell divisions. We hypothesized that the stability of heteroplasmy could be facilitated by intercellular exchange of mtDNA. We explicitly demonstrate this exchange by co-culturing cell lines with distinct mtDNA haplotypes. Our results shed new light on the maintenance of heteroplasmy and provide a novel platform to investigate features of heteroplasmy in normal and diseased states.

Indexed as

Biological TransportCell LineCell Line, TumorDNA, MitochondrialGenetic VariationHaplotypesHumansSequence Analysis, DNADNA, Mitochondrial

Identifiers

PMID25653158
PMCPMC4344500

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.