Evidence map›Paper›PMID 25653098›Full record

ArticleJournal of the American Society of Nephrology : JASN2015

Diabetes Induces Aberrant DNA Methylation in the Proximal Tubules of the Kidney.

Takeshi Marumo, Shintaro Yagi, Wakako Kawarazaki, Mitsuhiro Nishimoto, Nobuhiro Ayuzawa, Atsushi Watanabe, Kohei Ueda, Junichi Hirahashi, Keiichi Hishikawa, Hiroyuki Sakurai and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of the American Society of Nephrology : JASN, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed, 1 pooled it
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 1 synthesis or guideline pooled it, 111 citations in OpenAlex.

  1. Pooled it
  2. Review
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  4. Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. Article
  10. Update: the role of epigenetics in the metabolic memory of diabetic complications.American journal of physiology. Renal physiology · 2024
    Review
  11. Review
  12. Pathomechanisms of Diabetic Kidney Disease.Journal of clinical medicine · 2023
    Review
  13. Article
  14. Review
  15. Review
  16. Article
  17. Epigenetic modification in diabetic kidney disease.Frontiers in endocrinology · 2023
    Review
  18. Article
  19. Article
  20. Review

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Takeshi MarumoDivision of Clinical Epigenetics, Research Center for Advanced Science and Technology, CREST, Japan Science and Technology Agency, Tokyo, Japan;
Shintaro YagiLaboratory of Cellular Biochemistry, Department of Animal Resource Sciences/Veterinary Medical Sciences, and.
Wakako KawarazakiDivision of Clinical Epigenetics, Research Center for Advanced Science and Technology.
Mitsuhiro NishimotoDivision of Clinical Epigenetics, Research Center for Advanced Science and Technology.
Nobuhiro AyuzawaDivision of Clinical Epigenetics, Research Center for Advanced Science and Technology.
Atsushi WatanabeDivision of Clinical Epigenetics, Research Center for Advanced Science and Technology.
Kohei UedaDivision of Clinical Epigenetics, Research Center for Advanced Science and Technology.
Junichi HirahashiApheresis and Dialysis Center, School of Medicine, Keio University, Tokyo, Japan; and.
Keiichi HishikawaDepartment of Advanced Nephrology and Regenerative Medicine, The University of Tokyo, Tokyo, Japan;
Hiroyuki SakuraiDepartment of Pharmacology, School of Medicine, Kyorin University, Tokyo, Japan.
Kunio ShiotaLaboratory of Cellular Biochemistry, Department of Animal Resource Sciences/Veterinary Medical Sciences, and.
Toshiro FujitaDivision of Clinical Epigenetics, Research Center for Advanced Science and Technology, CREST, Japan Science and Technology Agency, Tokyo, Japan; Toshiro.FUJITA@rcast.u-tokyo.ac.jp tmarumo-npr@umin.ac.jp.
Center for High Pressure Science and Technology Advanced Research · CNJapan Science and Technology Agency · JPKeio University · JPKyorin University · JPThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Epigenetic mechanisms may underlie the progression of diabetic kidney disease. Because the kidney is a heterogeneous organ with different cell types, we investigated DNA methylation status of the kidney in a cell type-specific manner. We first identified genes specifically demethylated in the normal proximal tubules obtained from control db/m mice, and next delineated the candidate disease-modifying genes bearing aberrant DNA methylation induced by diabetes using db/db mice. Genes involved in glucose metabolism, including Sglt2, Pck1, and G6pc, were selectively hypomethylated in the proximal tubules in control mice. Hnf4a, a transcription factor regulating transporters for reabsorption, was also selectively demethylated. In diabetic mice, aberrant hypomethylation of Agt, Abcc4, Cyp4a10, Glut5, and Met and hypermethylation of Kif20b, Cldn18, and Slco1a1 were observed. Time-dependent demethylation of Agt, a marker of diabetic kidney disease, was accompanied by histone modification changes. Furthermore, inhibition of DNA methyltransferase or histone deacetylase increased Agt mRNA in cultured human proximal tubular cells. Aberrant DNA methylation and concomitant changes in histone modifications and mRNA expression in the diabetic kidney were resistant to antidiabetic treatment with pioglitazone. These results suggest that an epigenetic switch involving aberrant DNA methylation causes persistent mRNA expression of select genes that may lead to phenotype changes of the proximal tubules in diabetic kidney disease.

Indexed as

DNA MethylationAnimalsDiabetes Mellitus, ExperimentalKidney Tubules, ProximalMaleMiceMice, Inbred C57BLangiotensindiabetesrenal proximal tubule cell

Identifiers

PMID25653098
PMCPMC4587689
OpenAlexW2148560210

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.