Evidence map›Paper›PMID 25652783›Full record

ArticleNature communications2015

The assembly dynamics of the cytolytic pore toxin ClyA.

Stephan Benke, Daniel Roderer, Bengt Wunderlich, Daniel Nettels, Rudi Glockshuber, Benjamin Schuler

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
7.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 96 citations in OpenAlex.

  1. Cryo-EM structure of detergent-boundbioRxiv : the preprint server for biology · 2026
    Article
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  4. Review
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  6. Article
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  11. Fast slow folding of an outer membrane porin.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  12. Article
  13. Bacterial pore-forming toxins.Microbiology (Reading, England) · 2022
    Article
  14. Review
  15. Labeling of Proteins for Single-Molecule Fluorescence Spectroscopy.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  16. Challenges and approaches to studying pore-forming proteins.Biochemical Society transactions · 2021
    Review
  17. A tripartite cytolytic toxin formed byProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Stephan BenkeUniversity of Zurich, Department of Biochemistry, Winterthurerstrasse 190, 8057 Zurich, Switzerland.
Daniel RodererETH Zurich, Institute of Molecular Biology and Biophysics, Otto-Stern-Weg 5, 8093 Zurich, Switzerland.
Bengt WunderlichUniversity of Zurich, Department of Biochemistry, Winterthurerstrasse 190, 8057 Zurich, Switzerland.
Daniel NettelsUniversity of Zurich, Department of Biochemistry, Winterthurerstrasse 190, 8057 Zurich, Switzerland.
Rudi GlockshuberETH Zurich, Institute of Molecular Biology and Biophysics, Otto-Stern-Weg 5, 8093 Zurich, Switzerland.
Benjamin SchulerUniversity of Zurich, Department of Biochemistry, Winterthurerstrasse 190, 8057 Zurich, Switzerland.
University of Zurich · CHETH Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pore-forming toxins are protein assemblies used by many organisms to disrupt the membranes of target cells. They are expressed as soluble monomers that assemble spontaneously into multimeric pores. However, owing to their complexity, the assembly processes have not been resolved in detail for any pore-forming toxin. To determine the assembly mechanism for the ring-shaped, homododecameric pore of the bacterial cytolytic toxin ClyA, we collected a diverse set of kinetic data using single-molecule spectroscopy and complementary techniques on timescales from milliseconds to hours, and from picomolar to micromolar ClyA concentrations. The entire range of experimental results can be explained quantitatively by a surprisingly simple mechanism. First, addition of the detergent n-dodecyl-β-D-maltopyranoside to the soluble monomers triggers the formation of assembly-competent toxin subunits, accompanied by the transient formation of a molten-globule-like intermediate. Then, all sterically compatible oligomers contribute to assembly, which greatly enhances the efficiency of pore formation compared with simple monomer addition.

Indexed as

Protein MultimerizationAnimalsCells, CulturedErythrocytesEscherichia coliEscherichia coli ProteinsFluorescence Resonance Energy TransferGene ExpressionHemolysin ProteinsHemolysisHorsesKineticsMaltoseModels, MolecularProtein Structure, SecondaryProtein Structure, Tertiarydodecyl maltopyranosideEscherichia coli ProteinsHemolysin ProteinshlyE protein, E coliMaltoseProtein SubunitsRecombinant Proteins

Identifiers

PMID25652783
PMCPMC4347018
OpenAlexW2031286310

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.