Evidence map›Paper›PMID 25652336›Full record

ArticleNature communications2015

Antibody potency relates to the ability to recognize the closed, pre-fusion form of HIV Env.

Miklos Guttman, Albert Cupo, Jean-Philippe Julien, Rogier W Sanders, Ian A Wilson, John P Moore, Kelly K Lee

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 104 papers.

0numbers the graph read from it
0cells of the map it votes in
104citing papers in PubMed
11.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

104 citing papers in PubMed, 148 citations in OpenAlex.

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44 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Miklos GuttmanDepartment of Medicinal Chemistry, University of Washington, Box 357610, Seattle, Washington 98195, USA.
Albert CupoWeill Cornell Medical College, New York, New York 10021, USA.
Jean-Philippe JulienDepartment of Integrative Structural and Computational Biology, International AIDS Vaccine Initiative Neutralizing Antibody Center, Center for HIV/AIDS Vaccine Immunology and Immunogen Discovery and Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, California 92037, USA.
Rogier W Sanders1] Weill Cornell Medical College, New York, New York 10021, USA [2] Department of Medical Microbiology, Academic Medical Center, 1105 AZ Amsterdam, The Netherlands.
Ian A WilsonDepartment of Integrative Structural and Computational Biology, International AIDS Vaccine Initiative Neutralizing Antibody Center, Center for HIV/AIDS Vaccine Immunology and Immunogen Discovery and Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, California 92037, USA.
John P MooreWeill Cornell Medical College, New York, New York 10021, USA.
Kelly K LeeDepartment of Medicinal Chemistry, University of Washington, Box 357610, Seattle, Washington 98195, USA.
Cornell University · USUniversity of Washington · USInternational AIDS Vaccine Initiative · USScripps Research Institute · US

Funding

Support Component D/Vaccine Discovery, Concept to ClinicUM1AI100663 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI CRISPIN, MAX · 2012 to 2018
$131.5M
Virology CoreP30AI027767 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI OLAF KUTSCH · 1988 to 2026
$84.1M
Trimer Production and Immunogenicity TestingP01AI082362 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI WILSON, IAN A · 2009 to 2014
$16.0M
NEUTRALIZATION OF PRIMARY HIV1 VIRUSESR37AI036082 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI MOORE, JOHN P · 1998 to 2017
$7.0M
Waters ACQUITY UPLC M-Class with NanoLockSpray ionization sourceR01GM099989 · NIGMS · UNIVERSITY OF WASHINGTON · PI LEE, KELLY KEISEN · 2012 to 2020
$3.5M
Structural Biology of HIV-1 Neutralizing Antibody Targets for Vaccine DesignR01AI084817 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI WILSON, IAN A · 2009 to 2013
$3.2M
Structure and dynamics of native HIV-1 envelope trimersR56AI084817 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI WILSON, IAN A · 2015 to 2015
$593k
Biophysical Signatures in HIV-1 Env Correlating with Mother-to-Child TransmissionR21AI112389 · NIAID · UNIVERSITY OF WASHINGTON · PI LEE, KELLY KEISEN · 2014 to 2015
$471k
Investigating the Architecture of HIV Envelope GlycoproteinF32GM097805 · NIGMS · UNIVERSITY OF WASHINGTON · PI GUTTMAN, MIKLOS · 2012 to 2013
$101k
CIHREuropean Research Council 280829NIAID NIH HHS P01 AI082362NIAID NIH HHS P01-AI82362NIAID NIH HHS P30 AI027767NIAID NIH HHS P30-AI027767NIAID NIH HHS R01 AI084817NIAID NIH HHS R01-AI084817NIAID NIH HHS R21 AI112389NIAID NIH HHS R21-AI112389NIAID NIH HHS R37 AI036082NIAID NIH HHS R37-AI36082NIAID NIH HHS R56 AI084817NIAID NIH HHS UM1 AI100663NIGMS NIH HHS F32 GM097805NIGMS NIH HHS F32-GM097805NIGMS NIH HHS R01 GM099989NIGMS NIH HHS R01-GM099989
6 · The paper itself

Abstract

HIV's envelope glycoprotein (Env) is the sole target for neutralizing antibodies. The structures of many broadly neutralizing antibodies (bNAbs) in complex with truncated Env subunits or components have been reported. However, their interaction with the intact Env trimer, and the structural determinants that underlie neutralization resistance in this more native context are less well understood. Here we use hydrogen/deuterium exchange to examine the interactions between a panel of bNAbs and native-like Env trimers (SOSIP.664 trimers). Highly potent bNAbs cause only localized effects at their binding interface, while the binding of less potent antibodies is associated with elaborate changes throughout the trimer. In conjunction with binding kinetics, our results suggest that poorly neutralizing antibodies can only bind when the trimer transiently samples an open state. We propose that the kinetics of such opening motions varies among isolates, with Env from neutralization-sensitive viruses opening more frequently than Env from resistant viruses.

Indexed as

Antibodies, NeutralizingBinding SitesDeuterium Exchange Measurementenv Gene Products, Human Immunodeficiency VirusEpitopesGene ExpressionHEK293 CellsHIV-1HumansModels, MolecularProtein BindingProtein Interaction Domains and MotifsProtein MultimerizationProtein Structure, QuaternaryProtein Structure, SecondaryRecombinant ProteinsAntibodies, Neutralizingenv Gene Products, Human Immunodeficiency VirusEpitopesRecombinant Proteins

Identifiers

PMID25652336
PMCPMC4338595
OpenAlexW2046863461

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.