Evidence map›Paper›PMID 25652260›Full record

ArticleEMBO reports2015

Genome-wide screen identifies a novel p97/CDC-48-dependent pathway regulating ER-stress-induced gene transcription.

Esther Marza, Saïd Taouji, Kim Barroso, Anne-Aurélie Raymond, Léo Guignard, Marc Bonneu, Néstor Pallares-Lupon, Jean-William Dupuy, Martin E Fernandez-Zapico, Jean Rosenbaum and 3 more

Abstract read
In one paragraph

Article in EMBO reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Golgi Structure and Function in Health, Stress, and Diseases.Results and problems in cell differentiation · 2019
    Review
  6. De novo peptide sequencing by deep learning.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Esther MarzaTeam "Endoplasmic Reticulum stress and cancer", INSERM, UMR1053, Bordeaux, France University of Bordeaux, Bordeaux, France ARNA laboratory, INSERM U869, Bordeaux, France.
Saïd TaoujiTeam "Endoplasmic Reticulum stress and cancer", INSERM, UMR1053, Bordeaux, France University of Bordeaux, Bordeaux, France.
Kim BarrosoTeam "Endoplasmic Reticulum stress and cancer", INSERM, UMR1053, Bordeaux, France University of Bordeaux, Bordeaux, France.
Anne-Aurélie RaymondUniversity of Bordeaux, Bordeaux, France "REPTeam", INSERM, UMR1053, Bordeaux, France.
Léo GuignardUniversity of Bordeaux, Bordeaux, France ARNA laboratory, INSERM U869, Bordeaux, France.
Marc BonneuUniversity of Bordeaux, Bordeaux, France Plateforme Proteome, Bordeaux, France.
Néstor Pallares-LuponTeam "Endoplasmic Reticulum stress and cancer", INSERM, UMR1053, Bordeaux, France University of Bordeaux, Bordeaux, France.
Jean-William DupuyUniversity of Bordeaux, Bordeaux, France Plateforme Proteome, Bordeaux, France.
Martin E Fernandez-ZapicoSchulze Center for Novel Therapeutics, Division of Oncology Research, Mayo Clinic, Rochester, MN, USA.
Jean RosenbaumUniversity of Bordeaux, Bordeaux, France "REPTeam", INSERM, UMR1053, Bordeaux, France.
Francesca PalladinoLaboratory of Molecular and Cellular Biology, Ecole Normale Supérieure, CNRS UMR5239 Université de Lyon, Lyon Cedex 07, France.
Denis DupuyUniversity of Bordeaux, Bordeaux, France ARNA laboratory, INSERM U869, Bordeaux, France.
Eric ChevetTeam "Endoplasmic Reticulum stress and cancer", INSERM, UMR1053, Bordeaux, France University of Bordeaux, Bordeaux, France Centre Régional de Lutte Contre le Cancer Eugène Marquis, Rennes, France eric.chevet@inserm.fr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The accumulation of misfolded proteins in the endoplasmic reticulum (ER) activates the Unfolded Protein Response (UPR(ER)) to restore ER homeostasis. The AAA(+) ATPase p97/CDC-48 plays key roles in ER stress by promoting both ER protein degradation and transcription of UPR(ER) genes. Although the mechanisms associated with protein degradation are now well established, the molecular events involved in the regulation of gene transcription by p97/CDC-48 remain unclear. Using a reporter-based genome-wide RNAi screen in combination with quantitative proteomic analysis in Caenorhabditis elegans, we have identified RUVB-2, a AAA(+) ATPase, as a novel repressor of a subset of UPR(ER) genes. We show that degradation of RUVB-2 by CDC-48 enhances expression of ER stress response genes through an XBP1-dependent mechanism. The functional interplay between CDC-48 and RUVB-2 in controlling transcription of select UPR(ER) genes appears conserved in human cells. Together, these results describe a novel role for p97/CDC-48, whereby its role in protein degradation is integrated with its role in regulating expression of ER stress response genes.

Indexed as

Adenosine TriphosphatasesAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsCell Cycle ProteinsEndoplasmic Reticulum StressProteomicsRepressor ProteinsRNA InterferenceSignal TransductionTranscription, GeneticUnfolded Protein ResponseValosin Containing ProteinAdenosine TriphosphatasesCaenorhabditis elegans ProteinsCell Cycle ProteinsRepressor ProteinsRUVB-2 protein, C elegansValosin Containing ProteinAAA+ ATPaseproteostasisUPR

Identifiers

PMID25652260
PMCPMC4364872

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.