Evidence map›Paper›PMID 25651535›Full record

ArticleAngewandte Chemie (International ed. in English)2015

Fragment screening and druggability assessment for the CBP/p300 KIX domain through protein-observed 19F NMR spectroscopy.

Clifford T Gee, Edward J Koleski, William C K Pomerantz

Abstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. In Silico Druggability Assessment ofAntibiotics (Basel, Switzerland) · 2026
    Article
  2. Article
  3. Perspectives on Applications ofMolecules (Basel, Switzerland) · 2024
    Review
  4. Garcinolic Acid Distinguishes Between GACKIX Domains and Modulates Interaction Networks.Chembiochem : a European journal of chemical biology · 2023
    Article
  5. CirculatoryGenes · 2021
    Article
  6. RSC chemical biology · 2021
    Review
  7. Fragment-Based Ligand Discovery Using Protein-ObservedJournal of chemical education · 2021
    Article
  8. Article
  9. Applications of Solution NMR in Drug Discovery.Molecules (Basel, Switzerland) · 2021
    Review
  10. What turns CREB on? And off? And why does it matter?Cellular and molecular life sciences : CMLS · 2020
    Review
  11. Article
  12. SAR by (Protein-Observed)Accounts of chemical research · 2019
    Review
  13. Article
  14. Covalent Chemical Cochaperones of the p300/CBP GACKIX Domain.Chembiochem : a European journal of chemical biology · 2018
    Article
  15. Dual Labeling of the CBP/p300 KIX Domain forChembiochem : a European journal of chemical biology · 2018
    Article
  16. Review
  17. Article
  18. ProteinJournal of biomolecular NMR · 2017
    Article
  19. Article
  20. A cell is more than the sum of its (dilute) parts: A brief history of quinary structure.Protein science : a publication of the Protein Society · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Clifford T GeeDepartment of Chemistry, University of Minnesota, 207 Pleasant St. SE, Twin Cities (USA).
Edward J Koleski
William C K Pomerantz

Funding

Chemistry-Biology Interface Training GrantT32GM008700 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI DISTEFANO, MARK D · 1999 to 2018
$4.0M
NIGMS NIH HHS T32 GM008700NIGMS NIH HHS T32-GM08700
6 · The paper itself

Abstract

(19)F NMR spectroscopy of labeled proteins is a sensitive method for characterizing structure, conformational dynamics, higher-order assembly, and ligand binding. Fluorination of aromatic side chains has been suggested as a labeling strategy for small-molecule ligand discovery for protein-protein interaction interfaces. Using a model transcription factor binding domain of the CREB binding protein (CBP)/p300, KIX, we report the first full small-molecule screen using protein-observed (19)F NMR spectroscopy. Screening of 508 compounds and validation by (1)H-(15)N HSQC NMR spectroscopy led to the identification of a minimal pharmacaphore for the MLL-KIX interaction site. Hit rate analysis for the CREB-KIX and MLL-KIX sites provided a metric to assess the ligandability or "druggability" of each interface informing future medicinal chemistry efforts. The structural information from the simplified spectra and data collection speed, affords a new screening tool for analysis of protein interfaces and discovery of small molecules.

Indexed as

Nuclear Magnetic Resonance, BiomolecularAnimalsBinding SitesCREB-Binding ProteinE1A-Associated p300 ProteinFluorineHumansLigandsProtein BindingProtein Interaction Domains and MotifsProtein Structure, TertiaryStructure-Activity RelationshipCREB-Binding ProteinE1A-Associated p300 ProteinEP300 protein, humanFluorineLigandsbiomolecular NMRfluorinefragment screeningprotein-protein interactionstranscription

Identifiers

PMID25651535
PMCPMC4423596

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.