Evidence map›Paper›PMID 25651211›Full record

ArticleGenome biology2015

Causes and consequences of crossing-over evidenced via a high-resolution recombinational landscape of the honey bee.

Haoxuan Liu, Xiaohui Zhang, Ju Huang, Jian-Qun Chen, Dacheng Tian, Laurence D Hurst, Sihai Yang

Abstract read
In one paragraph

Article in Genome biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

7 authors.

Haoxuan Liu
Xiaohui Zhang
Ju Huang
Jian-Qun Chen
Dacheng Tian
Laurence D Hurst
Sihai Yang

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSocial hymenoptera, the honey bee (Apis mellifera) in particular, have ultra-high crossover rates and a large degree of intra-genomic variation in crossover rates. Aligned with haploid genomics of males, this makes them a potential model for examining the causes and consequences of crossing over. To address why social insects have such high crossing-over rates and the consequences of this, we constructed a high-resolution recombination atlas by sequencing 55 individuals from three colonies with an average marker density of 314 bp/marker.

resultsWe find crossing over to be especially high in proximity to genes upregulated in worker brains, but see no evidence for a coupling with immune-related functioning. We detect only a low rate of non-crossover gene conversion, contrary to current evidence. This is in striking contrast to the ultrahigh crossing-over rate, almost double that previously estimated from lower resolution data. We robustly recover the predicted intragenomic correlations between crossing over and both population level diversity and GC content, which could be best explained as indirect and direct consequences of crossing over, respectively.

conclusionsOur data are consistent with the view that diversification of worker behavior, but not immune function, is a driver of the high crossing-over rate in bees. While we see both high diversity and high GC content associated with high crossing-over rates, our estimate of the low non-crossover rate demonstrates that high non-crossover rates are not a necessary consequence of high recombination rates.

Indexed as

Crossing Over, GeneticAnimalsBase CompositionBeesBrainChromosomes, InsectGenetic MarkersGenome, InsectGenomicsHaplotypesImmunityModels, GeneticNucleotide MotifsRecombination, GeneticGenetic Markers

Identifiers

PMID25651211
PMCPMC4305242

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.