Evidence map›Paper›PMID 25651181›Full record

ArticleCell metabolism2015

Identification of natural RORγ ligands that regulate the development of lymphoid cells.

Fabio R Santori, Pengxiang Huang, Serge A van de Pavert, Eugene F Douglass, David J Leaver, Brad A Haubrich, Rok Keber, Gregor Lorbek, Tanja Konijn, Brittany N Rosales and 7 more

Abstract read
In one paragraph

Article in Cell metabolism, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 141 papers.

0numbers the graph read from it
0cells of the map it votes in
141citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

141 citing papers in PubMed.

  1. Trial
  2. A dysbiotic microbiome triggers TScience translational medicine · 2018
    Trial
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Acsbg1 regulates differentiation and inflammatory properties of CD4+ T cells.European journal of microbiology & immunology · 2025
    Article
  15. Review
  16. Review
  17. Review
  18. Review
  19. Review
  20. Knockouts ofiScience · 2024
    Article

81 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Fabio R SantoriThe Kimmel Center for Biology and Medicine of the Skirball Institute, New York University School of Medicine, New York, NY 10016, USA. Electronic address: fsantof01@gmail.com.
Pengxiang HuangMetabolic Disease Program, Sanford-Burnham Medical Research Institute, 6400 Sanger Road, Orlando, FL 32827, USA.
Serge A van de PavertVU University Medical Center, Department of Molecular Cell Biology and Immunology, van der Boechorststraat 7, 1081BT Amsterdam, the Netherlands.
Eugene F DouglassThe Kimmel Center for Biology and Medicine of the Skirball Institute, New York University School of Medicine, New York, NY 10016, USA.
David J LeaverCenter for Chemical Biology and Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, TX 79409, USA.
Brad A HaubrichCenter for Chemical Biology and Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, TX 79409, USA.
Rok KeberDepartment of Animal Science, Biotechnical Faculty, University of Ljubljana, Groblje 3, 1230 Domzale, Slovenia.
Gregor LorbekInstitute of Biochemistry, Center for Functional Genomics and Bio-chips, Faculty of Medicine, University of Ljubljana, Zaloska 4, 1000 Ljubljana, Slovenia.
Tanja KonijnVU University Medical Center, Department of Molecular Cell Biology and Immunology, van der Boechorststraat 7, 1081BT Amsterdam, the Netherlands.
Brittany N RosalesCenter for Chemical Biology and Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, TX 79409, USA.
Damjana RozmanInstitute of Biochemistry, Center for Functional Genomics and Bio-chips, Faculty of Medicine, University of Ljubljana, Zaloska 4, 1000 Ljubljana, Slovenia.
Simon HorvatDepartment of Animal Science, Biotechnical Faculty, University of Ljubljana, Groblje 3, 1230 Domzale, Slovenia; National Institute of Chemistry, Hajdrihova 19, 1000 Ljubljana, Slovenia.
Alain RahierInstitut de Biologie Moleculaire des Plantes (IBMP), CNRS-UPR2357, 67083 Strasbourg, France.
Reina E MebiusVU University Medical Center, Department of Molecular Cell Biology and Immunology, van der Boechorststraat 7, 1081BT Amsterdam, the Netherlands.
Fraydoon RastinejadMetabolic Disease Program, Sanford-Burnham Medical Research Institute, 6400 Sanger Road, Orlando, FL 32827, USA.
W David NesCenter for Chemical Biology and Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, TX 79409, USA.
Dan R LittmanThe Kimmel Center for Biology and Medicine of the Skirball Institute, New York University School of Medicine, New York, NY 10016, USA; Howard Hughes Medical Institute, New York University School of Medicine, New York, NY 10016, USA.

Funding

RESEARCH IN THE PATHOGENESIS OF HEMATOLOGIC DISORDERST32HL007151 · NHLBI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI AL-HOMSI, AHMAD SAMER · 1988 to 2018
$5.9M
Roles of nucleoporins in RORgammat-dependent immune functionsR01AI080885 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI LITTMAN, DAN · 2009 to 2020
$4.3M
Howard Hughes Medical InstituteNHLBI NIH HHS T32 HL007151NHLBI NIH HHS T32HL007151NIAID NIH HHS R01 AI080885NIAID NIH HHS R01-AI080885-01A1
6 · The paper itself

Abstract

Mice deficient in the nuclear hormone receptor RORγt have defective development of thymocytes, lymphoid organs, Th17 cells, and type 3 innate lymphoid cells. RORγt binds to oxysterols derived from cholesterol catabolism, but it is not clear whether these are its natural ligands. Here, we show that sterol lipids are necessary and sufficient to drive RORγt-dependent transcription. We combined overexpression, RNAi, and genetic deletion of metabolic enzymes to study RORγ-dependent transcription. Our results are consistent with the RORγt ligand(s) being a cholesterol biosynthetic intermediate (CBI) downstream of lanosterol and upstream of zymosterol. Analysis of lipids bound to RORγ identified molecules with molecular weights consistent with CBIs. Furthermore, CBIs stabilized the RORγ ligand-binding domain and induced coactivator recruitment. Genetic deletion of metabolic enzymes upstream of the RORγt-ligand(s) affected the development of lymph nodes and Th17 cells. Our data suggest that CBIs play a role in lymphocyte development potentially through regulation of RORγt.

Indexed as

AnimalsCell LineCholesterolDrosophila melanogasterHEK293 CellsHumansLigandsLymphocytesMaleMiceMice, KnockoutMice, TransgenicNuclear Receptor Subfamily 1, Group F, Member 3Sterol 14-DemethylaseSterolsTh17 CellsCholesterolCyp51 protein, mouseLigandsNuclear Receptor Subfamily 1, Group F, Member 3Sterol 14-DemethylaseSterols

Identifiers

PMID25651181
PMCPMC4317570

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.