Evidence map›Paper›PMID 25651062›Full record

ArticleStructure (London, England : 1993)2015

An acetyl-methyl switch drives a conformational change in p53.

Qiong Tong, Sharlyn J Mazur, Hector Rincon-Arano, Scott B Rothbart, Dmitry M Kuznetsov, Gaofeng Cui, Wallace H Liu, Yantenew Gete, Brianna J Klein, Lisa Jenkins and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Chemical proteomics approaches for protein post-translational modification studies.Biochimica et biophysica acta. Proteins and proteomics · 2024
    Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. p53 shades of Hippo.Cell death and differentiation · 2018
    Review
  14. Mechanisms of transcriptional regulation by p53.Cell death and differentiation · 2018
    Review
  15. Review
  16. Review
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 1 country.

Qiong TongDepartment of Pharmacology, University of Colorado School of Medicine, Aurora, CO 80045, USA.
Sharlyn J MazurLaboratory of Cell Biology, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
Hector Rincon-AranoBasic Science Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.
Scott B RothbartDepartment of Biochemistry and Biophysics and the Lineberger Comprehensive Cancer Center, University of North Carolina School of Medicine, Chapel Hill, NC 27599, USA.
Dmitry M KuznetsovDepartment of Chemistry and Biochemistry, University of Denver, Denver, CO 80210, USA.
Gaofeng CuiDepartment of Biochemistry and Molecular Biology, Mayo Clinic College of Medicine, Rochester, MN 55905, USA.
Wallace H LiuDepartment of Pharmacology, University of Colorado School of Medicine, Aurora, CO 80045, USA.
Yantenew GeteLaboratory of Cell Biology, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
Brianna J KleinDepartment of Pharmacology, University of Colorado School of Medicine, Aurora, CO 80045, USA.
Lisa JenkinsLaboratory of Cell Biology, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
Georges MerDepartment of Biochemistry and Molecular Biology, Mayo Clinic College of Medicine, Rochester, MN 55905, USA.
Andrei G KutateladzeDepartment of Chemistry and Biochemistry, University of Denver, Denver, CO 80210, USA.
Brian D StrahlDepartment of Biochemistry and Biophysics and the Lineberger Comprehensive Cancer Center, University of North Carolina School of Medicine, Chapel Hill, NC 27599, USA.
Mark GroudineBasic Science Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA; Department of Radiation Oncology, University Washington School of Medicine, Seattle, WA 98109, USA.
Ettore AppellaLaboratory of Cell Biology, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
Tatiana G KutateladzeDepartment of Pharmacology, University of Colorado School of Medicine, Aurora, CO 80045, USA. Electronic address: tatiana.kutateladze@ucdenver.edu.
National Cancer Institute · USUniversity of Colorado Denver · USMayo Clinic · USUniversity of Denver · USUniversity of North Carolina at Chapel Hill · USFred Hutch Cancer Center · USUniversity of Washington · US

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
Targeted MV-CEA as a Potent Antitumor Agent against GBMP50CA108961 · NCI · MAYO CLINIC ROCHESTER · PI O'NEILL, BRIAN PATRICK · 2004 to 2015
$22.5M
MAINTENANCE OF GENE EXPRESSION IN THE RED CELL LINEAGER01HL065440 · NHLBI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI GROUDINE, MARK T · 2000 to 2018
$12.4M
Tumor Suppressor Protein, p53ZIABC005599 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI APPELLA, ETTORE · 2009 to 2025
$8.1M
Chromosome Metabolism and Cancer Training GrantT32CA009657 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI EISENMAN, ROBERT NEIL · 1991 to 2020
$7.6M
Structural Biology of Lysine Methylation in DNA Damage and Checkpoint SignalingR01CA132878 · NCI · MAYO CLINIC ROCHESTER · PI Georges Mer · 2008 to 2026
$4.5M
Molecular analysis of methylated p53R01GM101664 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2013 to 2016
$1.7M
Molecular mechanism of chromatin targeting by BRPF1R01GM100907 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2015 to 2018
$1.4M
Factors that regulate chromatin organization and gene transcriptionR01GM110058 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI STRAHL, BRIAN D · 2014 to 2017
$1.2M
Topologically Unique Scaffolds in Photoassisted Diversity Oriented Synthesis (PDOR15GM093930 · NIGMS · UNIVERSITY OF DENVER (COLORADO SEMINARY) · PI KUTATELADZE, ANDREI G · 2010 to 2017
$1.1M
Mechanisms Regulating DNA Methylation Maintenance in ChromatinR00CA181343 · NCI · VAN ANDEL RESEARCH INSTITUTE · PI ROTHBART, SCOTT · 2015 to 2017
$746k
Mechanisms Regulating DNA Methylation Maintenance in ChromatinK99CA181343 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ROTHBART, SCOTT · 2014 to 2015
$211k
NCI NIH HHS CA132878NCI NIH HHS CA181343NCI NIH HHS K99 CA181343NCI NIH HHS P30 CA046934NCI NIH HHS P50 CA108961NCI NIH HHS R00 CA181343NCI NIH HHS R01 CA132878NCI NIH HHS T32 CA009657NCI NIH HHS T32CA009657NHLBI NIH HHS HL65440NHLBI NIH HHS R01 HL065440NIGMS NIH HHS GM093930NIGMS NIH HHS GM101664NIGMS NIH HHS GM110058NIGMS NIH HHS R01 GM100907NIGMS NIH HHS R01 GM101664NIGMS NIH HHS R01 GM110058NIGMS NIH HHS R15 GM093930
6 · The paper itself

Abstract

Individual posttranslational modifications (PTMs) of p53 mediate diverse p53-dependent responses; however, much less is known about the combinatorial action of adjacent modifications. Here, we describe crosstalk between the early DNA damage response mark p53K382me2 and the surrounding PTMs that modulate binding of p53 cofactors, including 53BP1 and p300. The 1.8 Å resolution crystal structure of the tandem Tudor domain (TTD) of 53BP1 in complex with p53 peptide acetylated at K381 and dimethylated at K382 (p53K381acK382me2) reveals that the dual PTM induces a conformational change in p53. The α-helical fold of p53K381acK382me2 positions the side chains of R379, K381ac, and K382me2 to interact with TTD concurrently, reinforcing a modular design of double PTM mimetics. Biochemical and nuclear magnetic resonance analyses show that other surrounding PTMs, including phosphorylation of serine/threonine residues of p53, affect association with TTD. Our findings suggest a novel PTM-driven conformation switch-like mechanism that may regulate p53 interactions with binding partners.

Indexed as

LigandsModels, MolecularCrystallography, X-RayDNA DamageDNA MethylationHumansLysineMagnetic Resonance SpectroscopyProtein ConformationProtein Processing, Post-TranslationalTumor Suppressor Protein p53LigandsLysineTumor Suppressor Protein p53

Identifiers

PMID25651062
PMCPMC4317571
OpenAlexW1990056483

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.