Evidence map›Paper›PMID 25650486›Full record

ArticleJournal of the American Chemical Society2015

X-ray radiation induces deprotonation of the bilin chromophore in crystalline D. radiodurans phytochrome.

Feifei Li, E Sethe Burgie, Tao Yu, Annie Héroux, George C Schatz, Richard D Vierstra, Allen M Orville

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
5.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Conserved histidine and tyrosine determine spectral responses through the water network in Deinococcus radiodurans phytochrome.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2022
    Article
  3. Article
  4. Structural elements regulating the photochromicity in a cyanobacteriochrome.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  5. Photoreversible interconversion of a phytochrome photosensory module in the crystalline state.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Feifei LiPhoton Sciences Directorate and ∥Biosciences Department, Brookhaven National Laboratory , Upton, New York 11973, United States.
E Sethe Burgie
Tao Yu
Annie Héroux
George C Schatz
Richard D Vierstra
Allen M Orville
Brookhaven National Laboratory · USNorthwestern University · USUniversity of Wisconsin–Madison · USNew Mexico State University · US

Funding

Macromolecular Crystallography at the National Synchrotron Light SourceP41GM103473 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI SWEET, ROBERT M · 2012 to 2013
$4.9M
NIGMS NIH HHS 8P41GM103473-16NIGMS NIH HHS P41 GM103473
6 · The paper itself

Abstract

We report that in the red light-absorbing (Pr) state, the bilin chromophore of the Deinococcus radiodurans proteobacterial phytochrome (DrBphP) is hypersensitive to X-ray photons used in typical synchrotron X-ray protein crystallography experiments. This causes the otherwise fully protonated chromophore to deprotonate without additional major structural changes. These results have major implications for our understanding of the structural and chemical characteristics of the resting and intermediate states of phytochromes and other photoreceptor proteins.

Indexed as

DeinococcusProtonsBacterial ProteinsBile PigmentsCrystallography, X-RayMolecular Dynamics SimulationPhytochromeProtein ConformationX-RaysBacterial ProteinsBile PigmentsPhytochromeProtons

Identifiers

PMID25650486
PMCPMC5660918
OpenAlexW2036356024

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.