Evidence map›Paper›PMID 25650115›Full record

ArticleNature communications2015

Collaborative rewiring of the pluripotency network by chromatin and signalling modulating pathways.

Khoa A Tran, Steven A Jackson, Zachariah P G Olufs, Nur Zafirah Zaidan, Ning Leng, Christina Kendziorski, Sushmita Roy, Rupa Sridharan

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Metabolic control of induced pluripotency.Frontiers in cell and developmental biology · 2023
    Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Small molecules for reprogramming and transdifferentiation.Cellular and molecular life sciences : CMLS · 2017
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Molecular features of cellular reprogramming and development.Nature reviews. Molecular cell biology · 2016
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Khoa A Tran1] Wisconsin Institute for Discovery, University of Wisconsin, Madison, 330 N. Orchard Street, Room 2118, Wisconsin 53715, USA [2] Molecular and Cellular Pharmacology Program, University of Wisconsin, Madison, 330 N. Orchard Street, Room 2118, Wisconsin 53715, USA.
Steven A JacksonWisconsin Institute for Discovery, University of Wisconsin, Madison, 330 N. Orchard Street, Room 2118, Wisconsin 53715, USA.
Zachariah P G OlufsWisconsin Institute for Discovery, University of Wisconsin, Madison, 330 N. Orchard Street, Room 2118, Wisconsin 53715, USA.
Nur Zafirah ZaidanWisconsin Institute for Discovery, University of Wisconsin, Madison, 330 N. Orchard Street, Room 2118, Wisconsin 53715, USA.
Ning LengDepartment of Statistics, University of Wisconsin, Madison, 330 N. Orchard Street, Room 2118, Wisconsin 53715, USA.
Christina KendziorskiDepartment of Biostatistics and Medical Informatics, University of Wisconsin, Madison, 330 N. Orchard Street, Room 2118, Wisconsin 53715, USA.
Sushmita Roy1] Wisconsin Institute for Discovery, University of Wisconsin, Madison, 330 N. Orchard Street, Room 2118, Wisconsin 53715, USA [2] Department of Biostatistics and Medical Informatics, University of Wisconsin, Madison, 330 N. Orchard Street, Room 2118, Wisconsin 53715, USA.
Rupa Sridharan1] Wisconsin Institute for Discovery, University of Wisconsin, Madison, 330 N. Orchard Street, Room 2118, Wisconsin 53715, USA [2] Department of Cell and Regenerative Biology, University of Wisconsin, Madison, 330 N. Orchard Street, Room 2118, Wisconsin 53715, USA.
University of Wisconsin–Madison · USWisconsin Institutes for Discovery · US

Funding

INSTITUTIONAL CTSA (UW-MADISON): CLINICAL TRIALSUL1RR025011 · NCRR · UNIVERSITY OF WISCONSIN-MADISON · PI DREZNER, MARC KENNETH · 2007 to 2011
$29.5M
Statistical methods for spatial RNA sequencing experimentsR01GM102756 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI KENDZIORSKI, CHRISTINA · 2012 to 2024
$3.8M
NCRR NIH HHS UL1 RR025011NIGMS NIH HHS GM102756NIGMS NIH HHS R01 GM102756
6 · The paper itself

Abstract

Reprogramming of somatic cells to induced pluripotent stem cells (iPSCs) represents a profound change in cell fate. Here, we show that combining ascorbic acid (AA) and 2i (MAP kinase and GSK inhibitors) increases the efficiency of reprogramming from fibroblasts and synergistically enhances conversion of partially reprogrammed intermediates to the iPSC state. AA and 2i induce differential transcriptional responses, each leading to the activation of specific pluripotency loci. A unique cohort of pluripotency genes including Esrrb require both stimuli for activation. Temporally, AA-dependent histone demethylase effects are important early, whereas Tet enzyme effects are required throughout the conversion. 2i function could partially be replaced by depletion of components of the epidermal growth factor (EGF) and insulin growth factor pathways, indicating that they act as barriers to reprogramming. Accordingly, reduction in the levels of the EGF receptor gene contributes to the activation of Esrrb. These results provide insight into the rewiring of the pluripotency network at the late stage of reprogramming.

Indexed as

Epigenesis, GeneticSignal TransductionAnimalsAscorbic AcidAstrocytesCell DifferentiationCellular ReprogrammingChromatinEmbryo, MammalianEpidermal Growth FactorErbB ReceptorsFibroblastsGene Regulatory NetworksGenes, ReporterGreen Fluorescent ProteinsInduced Pluripotent Stem CellsAscorbic AcidChromatinEpidermal Growth FactorErbB ReceptorsEsrrb protein, mouseGreen Fluorescent ProteinsProtein Kinase InhibitorsReceptors, EstrogenRNA, Small InterferingSomatomedins

Identifiers

PMID25650115
PMCPMC4347202
OpenAlexW2073716029

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.