Evidence map›Paper›PMID 25649688›Full record

ArticleMolecular microbiology2015

Hfq binds directly to the ribosome-binding site of IS10 transposase mRNA to inhibit translation.

Michael J Ellis, Ryan S Trussler, David B Haniford

Open access · hybridAbstract read
In one paragraph

Article in Molecular microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 67 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Differential Chromosome- and Plasmid-Borne Resistance ofInternational journal of molecular sciences · 2021
    Article
  14. Article
  15. Review
  16. Widespread targeting of nascent transcripts by RsmA inProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  17. Review
  18. Modulation of Bacterial Fitness and Virulence Through Antisense RNAs.Frontiers in cellular and infection microbiology · 2020
    Review
  19. Review
  20. Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Michael J EllisDepartment of Biochemistry, University of Western Ontario, London, Ontario, N6A 5C1, Canada.
Ryan S Trussler
David B Haniford
Western University · CA

Funding

Canadian Institutes of Health Research MOP 11281
6 · The paper itself

Abstract

Hfq is a critical component of post-transcriptional regulatory networks in most bacteria. It usually functions as a chaperone for base-pairing small RNAs, although non-canonical regulatory roles are continually emerging. We have previously shown that Hfq represses IS10/Tn10 transposase expression through both antisense RNA-dependent and independent mechanisms. In the current work, we set out to define the regulatory role of Hfq in the absence of the IS10 antisense RNA. We show here that an interaction between the distal surface of Hfq and the ribosome-binding site of transposase mRNA (RNA-IN) is required for repressing translation initiation. Additionally, this interaction was critical for the in vivo association of Hfq and RNA-IN. Finally, we present evidence that the small RNA ChiX activates transposase expression by titrating Hfq away from RNA-IN. The current results are considered in the broader context of Hfq biology and implications for Hfq titration by ChiX are discussed.

Indexed as

Gene Expression Regulation, BacterialPeptide Chain Initiation, TranslationalEscherichia coliEscherichia coli ProteinsHost Factor 1 ProteinProtein BindingRNA, MessengerTransposasesEscherichia coli ProteinsHfq protein, E coliHost Factor 1 ProteinIS10 transposaseRNA, MessengerTransposases

Identifiers

PMID25649688
PMCPMC5006887
OpenAlexW2119819241

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.