Evidence map›Paper›PMID 25649684›Full record

ArticleBMC microbiology2015

The immediate global responses of Aliivibrio salmonicida to iron limitations.

Sunniva Katharina Thode, Tim Kahlke, Espen Mikal Robertsen, Hilde Hansen, Peik Haugen

Abstract read
In one paragraph

Article in BMC microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Applied and environmental microbiology · 2025
    Article
  3. Inhibition of Virulence-Related Traits inFrontiers in microbiology · 2019
    Article
  4. Article
  5. Construction of aPeerJ · 2017
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sunniva Katharina ThodeDepartment of Chemistry and The Norwegian Structural Biology Centre, Faculty of Science and Technology, UiT - The Arctic University of Norway, Tromsø, 9037, Norway. sunniva.k.thode@uit.no.
Tim KahlkeDepartment of Chemistry and The Norwegian Structural Biology Centre, Faculty of Science and Technology, UiT - The Arctic University of Norway, Tromsø, 9037, Norway. kah023@csiro.au.
Espen Mikal RobertsenDepartment of Chemistry and The Norwegian Structural Biology Centre, Faculty of Science and Technology, UiT - The Arctic University of Norway, Tromsø, 9037, Norway. espen.m.robertsen@uit.no.
Hilde HansenDepartment of Chemistry and The Norwegian Structural Biology Centre, Faculty of Science and Technology, UiT - The Arctic University of Norway, Tromsø, 9037, Norway. hilde.hansen@uit.no.
Peik HaugenDepartment of Chemistry and The Norwegian Structural Biology Centre, Faculty of Science and Technology, UiT - The Arctic University of Norway, Tromsø, 9037, Norway. peik.haugen@uit.no.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIron is an essential micronutrient for all living organisms, and virulence and sequestration of iron in pathogenic bacteria are believed to be correlated. As a defence mechanism, potential hosts therefore keep the level of free iron inside the body to a minimum. In general, iron metabolism is well studied for some bacteria (mostly human or animal pathogens). However, this area is still under-investigated for a number of important bacterial pathogens. Aliivibrio salmonicida is a fish pathogen, and previous studies of this bacterium have shown that production of siderophores is temperature regulated and dependent on low iron conditions. In this work we studied the immediate changes in transcription in response to a sudden decrease in iron levels in cultures of A. salmonicida. In addition, we compared our results to studies performed with Vibrio cholerae and Vibrio vulnificus using a pan-genomic approach.

resultsMicroarray technology was used to monitor global changes in transcriptional levels. Cultures of A. salmonicida were grown to mid log phase before the iron chelator 2,2'-dipyridyl was added and samples were collected after 15 minutes of growth. Using our statistical cut-off values, we retrieved thirty-two differentially expressed genes where the most up-regulated genes belong to an operon encoding proteins responsible for producing the siderophore bisucaberin. A subsequent pan-transcriptome analysis revealed that nine of the up-regulated genes from our dataset were also up-regulated in datasets from similar experiments using V. cholerae and V. vulnificus, thus indicating that these genes are involved in a shared strategy to mitigate low iron conditions.

conclusionsThe present work highlights the effect of iron limitation on the gene regulatory network of the fish pathogen A. salmonicida, and provides insights into common and unique strategies of Vibrionaceae species to mitigate low iron conditions.

Indexed as

Gene Expression Regulation, BacterialStress, PhysiologicalAliivibrio salmonicidaGene Expression ProfilingIronMicroarray AnalysisMolecular Sequence DataSequence Analysis, DNASiderophoresVibrio choleraeVibrio vulnificusIronSiderophores

Identifiers

PMID25649684
PMCPMC4324432

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.