Evidence map›Paper›PMID 25649186›Full record

ArticleGut pathogens2014

Whole genome sequence and comparative genomic analysis of multidrug-resistant Staphylococcus capitis subsp. urealyticus strain LNZR-1.

Xiaoxia Li, Min Lei, Yanli Song, Kunwei Gong, Ling Li, Hongyan Liang, Xiaofeng Jiang

Open access · goldAbstract read
In one paragraph

Article in Gut pathogens, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.2field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Clinical microbiology reviews · 2024
    Review
  3. Article
  4. Antibiotics (Basel, Switzerland) · 2023
    Review
  5. Article
  6. Article
  7. Coagulase-Negative Staphylococci Pathogenomics.International journal of molecular sciences · 2019
    Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Xiaoxia Li *Department of Clinical Biochemistry Laboratory, The Fourth affiliated Hospital of Harbin Medical University, Harbin, China.
Min Lei *Department of Clinical Medical Laboratory, The Fifth Hospital of Harbin, Harbin, China.
Yanli SongDepartment of Clinical Medical Laboratory, The Fifth Hospital of Harbin, Harbin, China.
Kunwei GongDepartment of Clinical Medical Laboratory, The Fifth Hospital of Harbin, Harbin, China.
Ling LiDepartment of Clinical Medical Laboratory, The Fifth Hospital of Harbin, Harbin, China.
Hongyan LiangDepartment of Clinical Biochemistry Laboratory, The Fourth affiliated Hospital of Harbin Medical University, Harbin, China.
Xiaofeng JiangDepartment of Clinical Biochemistry Laboratory, The Fourth affiliated Hospital of Harbin Medical University, Harbin, China.
Fourth Affiliated Hospital of Harbin Medical University · CNWuhan University · CNFifth Hospital In Wuhan · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundStaphylococcus capitis is an emerging opportunistic pathogen of humans, and found as a colonizer of the human gut. Here, we report a case of S. capitis subsp. urealyticus infection. The strain LNZR-1 was isolated from the blood culture of a patient with sigmoid colon cancer. It was found to be resistant to some important antibiotics, such as linezolid, a highly effective antimicrobial against clinically important Staphylococci pathogens. However, data on the genetic resistance mechanisms in S. capitis subsp. urealyticus are only sparsely available.

resultsThe draft genome of S. capitis subsp. urealyticus strain LNZR-1 was sequenced by using next-generation sequencing technologies. Sequence data assembly revealed a genome size of 2,595,865 bp with a G + C content of 32.67%. Genome annotation revealed the presence of antibiotic resistance genes conferring resistance against some of the tested antibiotics as well as non-tested antibiotics. The genome also possesses a lot of genes that may be related to multidrug resistance. Whole genome comparison of the LNZR-1 with five other S. capitis strains showed that some functional regions are highly homologous between the six assemblies made herein. The LNZR-1 genome has high similarity with the genomes of the strains VCU116 and CR01, although some short stretches present in the genomes of strains VCU116 and CR01 were absent in the strain LNZR-1.

conclusionsThe presence of a plethora of genes responsible for antibiotic resistance suggests that strain LNZR-1 could present a potential threat to human health. The comparative genomic analysis of S. capitis strains presented in this study is important for better understanding of multidrug resistance in S. capitis.

Indexed as

Comparative genomic analysisGenome sequencingMultidrug-resistantStaphylococcus capitis subsp. urealyticus

Identifiers

PMID25649186
PMCPMC4310196
OpenAlexW2146764815

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.