Evidence map›Paper›PMID 25649139›Full record

ArticleNature communications2015

Genetic blueprint of the zoonotic pathogen Toxocara canis.

Xing-Quan Zhu, Pasi K Korhonen, Huimin Cai, Neil D Young, Peter Nejsum, Georg von Samson-Himmelstjerna, Peter R Boag, Patrick Tan, Qiye Li, Jiumeng Min and 8 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
9.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 135 citations in OpenAlex.

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  16. Lung Lipidomic Alterations in Beagle Dogs Infected withAnimals : an open access journal from MDPI · 2022
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  17. Identification of Novel Genes and Proteoforms inPathogens (Basel, Switzerland) · 2022
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  18. Animals : an open access journal from MDPI · 2022
    Article
  19. Article
  20. Article

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 8 institutions in 6 countries.

Xing-Quan Zhu1] State Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Veterinary Parasitology of Gansu Province, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou 730046, Gansu Province, China [2] Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Victoria 3010, Australia.
Pasi K KorhonenFaculty of Veterinary and Agricultural Sciences, The University of Melbourne, Victoria 3010, Australia.
Huimin CaiBGI, Shenzhen 518083, China.
Neil D YoungFaculty of Veterinary and Agricultural Sciences, The University of Melbourne, Victoria 3010, Australia.
Peter NejsumDepartment of Veterinary Disease Biology, University of Copenhagen, Copenhagen 2200, Denmark.
Georg von Samson-HimmelstjernaInstitute for Parasitology und Tropical Veterinary Medicine, Freie Universität Berlin, Berlin 14163, Germany.
Peter R BoagDepartment of Biochemistry and Molecular Biology, Monash University, Victoria 3800, Australia.
Patrick Tan1] Cancer and Stem Cell Biology, Duke-NUS Graduate Medical School, Singapore 138672, Republic of Singapore [2] Genome Institute of Singapore, 60 Biopolis Street, Singapore 138672, Republic of Singapore.
Qiye LiBGI, Shenzhen 518083, China.
Jiumeng MinBGI, Shenzhen 518083, China.
Yulan YangBGI, Shenzhen 518083, China.
Xiuhua WangBGI, Shenzhen 518083, China.
Xiaodong FangBGI, Shenzhen 518083, China.
Ross S HallFaculty of Veterinary and Agricultural Sciences, The University of Melbourne, Victoria 3010, Australia.
Andreas HofmannStructural Chemistry Program, Eskitis Institute, Griffith University, Brisbane 4111, Queensland, Australia.
Paul W SternbergHHMI, Division of Biology, California Institute of Technology, Pasadena 91125, California, USA.
Aaron R JexFaculty of Veterinary and Agricultural Sciences, The University of Melbourne, Victoria 3010, Australia.
Robin B GasserFaculty of Veterinary and Agricultural Sciences, The University of Melbourne, Victoria 3010, Australia.
BGI Group (China) · CNUniversity of Melbourne · AUCalifornia Institute of Technology · USFreie Universität Berlin · DEGenome Institute of Singapore · SGGriffith University · AUMonash University · AUUniversity of Copenhagen · DK

Funding

Howard Hughes Medical Institute
6 · The paper itself

Abstract

Toxocara canis is a zoonotic parasite of major socioeconomic importance worldwide. In humans, this nematode causes disease (toxocariasis) mainly in the under-privileged communities in developed and developing countries. Although relatively well studied from clinical and epidemiological perspectives, to date, there has been no global investigation of the molecular biology of this parasite. Here we use next-generation sequencing to produce a draft genome and transcriptome of T. canis to support future biological and biotechnological investigations. This genome is 317 Mb in size, has a repeat content of 13.5% and encodes at least 18,596 protein-coding genes. We study transcription in a larval, as well as adult female and male stages, characterize the parasite's gene-silencing machinery, explore molecules involved in development or host-parasite interactions and predict intervention targets. The draft genome of T. canis should provide a useful resource for future molecular studies of this and other, related parasites.

Indexed as

Genome, HelminthMolecular Sequence AnnotationOpen Reading FramesTranscriptomeAnimalsDogsFemaleGene SilencingGenome SizeHigh-Throughput Nucleotide SequencingHost-Parasite InteractionsHumansLarvaMaleMicrosatellite RepeatsPhylogeny

Identifiers

PMID25649139
PMCPMC4327413
OpenAlexW2114640202

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.