Evidence map›Paper›PMID 25648254›Full record

ArticleBioMed research international2015

Copy number variations in a population-based study of Charcot-Marie-Tooth disease.

Helle Høyer, Geir J Braathen, Anette K Eek, Gry B N Nordang, Camilla F Skjelbred, Michael B Russell

Open access · hybridAbstract read
In one paragraph

Article in BioMed research international, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Helle HøyerSection of Medical Genetics, Department of Laboratory Medicine, Telemark Hospital, 3710 Skien, Norway ; Head and Neck Research Group, Research Centre, Akershus University Hospital, 1478 Lørenskog, Norway ; Campus Akershus University Hospital, University of Oslo, 1474 Nordbyhagen, Norway.
Geir J BraathenSection of Medical Genetics, Department of Laboratory Medicine, Telemark Hospital, 3710 Skien, Norway ; Head and Neck Research Group, Research Centre, Akershus University Hospital, 1478 Lørenskog, Norway ; Campus Akershus University Hospital, University of Oslo, 1474 Nordbyhagen, Norway.
Anette K EekSection of Medical Genetics, Department of Laboratory Medicine, Telemark Hospital, 3710 Skien, Norway.
Gry B N NordangSection of Medical Genetics, Department of Laboratory Medicine, Telemark Hospital, 3710 Skien, Norway.
Camilla F SkjelbredSection of Medical Genetics, Department of Laboratory Medicine, Telemark Hospital, 3710 Skien, Norway.
Michael B RussellHead and Neck Research Group, Research Centre, Akershus University Hospital, 1478 Lørenskog, Norway ; Campus Akershus University Hospital, University of Oslo, 1474 Nordbyhagen, Norway.
Akershus University Hospital · NOTelemark Hospital · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Copy number variations (CNVs) are important in relation to diversity and evolution but can sometimes cause disease. The most common genetic cause of the inherited peripheral neuropathy Charcot-Marie-Tooth disease is the PMP22 duplication; otherwise, CNVs have been considered rare. We investigated CNVs in a population-based sample of Charcot-Marie-Tooth (CMT) families. The 81 CMT families had previously been screened for the PMP22 duplication and point mutations in 51 peripheral neuropathy genes, and a genetic cause was identified in 37 CMT families (46%). Index patients from the 44 CMT families with an unknown genetic diagnosis were analysed by whole-genome array comparative genomic hybridization to investigate the entire genome for larger CNVs and multiplex ligation-dependent probe amplification to detect smaller intragenomic CNVs in MFN2 and MPZ. One patient had the pathogenic PMP22 duplication not detected by previous methods. Three patients had potentially pathogenic CNVs in the CNTNAP2, LAMA2, or SEMA5A, that is, genes related to neuromuscular or neurodevelopmental disease. Genotype and phenotype correlation indicated likely pathogenicity for the LAMA2 CNV, whereas the CNTNAP2 and SEMA5A CNVs remained potentially pathogenic. Except the PMP22 duplication, disease causing CNVs are rare but may cause CMT in about 1% (95% CI 0-7%) of the Norwegian CMT families.

Indexed as

AdultCharcot-Marie-Tooth DiseaseChildDNA Copy Number VariationsFemaleGenetic Association StudiesGenotypeHumansLamininMaleMembrane ProteinsNerve Tissue ProteinsPeripheral Nervous System DiseasesPhenotypePoint MutationSemaphorinsCNTNAP2 protein, humanLamininlaminin alpha 2Membrane ProteinsNerve Tissue ProteinsSEMA5A protein, humanSemaphorins

Identifiers

PMID25648254
PMCPMC4306395
OpenAlexW2062368388

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.