Evidence map›Paper›PMID 25647737›Full record

ArticleMelanoma research2015

LINE-1 hypermethylation in peripheral blood of cutaneous melanoma patients is associated with metastasis.

Érica S S De Araújo, André Y Kashiwabara, Maria I W Achatz, Luciana F Moredo, Bianca C S De Sá, João P Duprat, Carla Rosenberg, Dirce M Carraro, Ana C V Krepischi

Open access · greenAbstract read
In one paragraph

Article in Melanoma research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 23 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Emerging Biomarkers in Cutaneous Melanoma.Molecular diagnosis & therapy · 2018
    Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Low Expression of Mir-137 Predicts Poor Prognosis in Cutaneous Melanoma Patients.Medical science monitor : international medical journal of experimental and clinical research · 2016
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Érica S S De AraújoaInternational Research Center bDepartment of Oncogenetics cSkin Cancer Department, A. C. Camargo Cancer Center dDepartment of Genetics and Evolutionary Biology, Institute of Biosciences, University of São Paulo, São Paulo eFederal Technological University of Paraná, Paraná, Brazil.
André Y Kashiwabara
Maria I W Achatz
Luciana F Moredo
Bianca C S De Sá
João P Duprat
Carla Rosenberg
Dirce M Carraro
Ana C V Krepischi
Universidade de São Paulo · BRCancer Genetics (United States) · USSKiN Health · CAUniversidade Tecnológica Federal do Paraná · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Aberrant DNA methylation pattern is a well-known epigenetic marker of cancer cells. Recently, aberrant methylation was also reported in the peripheral blood of cancer patients and it could potentially serve as a biomarker for cancer risk. We investigated the methylation pattern of LINE-1 and other repetitive DNA elements in peripheral blood of cutaneous melanoma patients in order to search for an association with clinical characteristics. The patient cohort was composed by 69 unrelated melanoma patients, 28 of whom were hereditary cases (with or without CDKN2A mutations) and 41 were isolated (sporadic) melanoma cases. Methylation of LINE-1 was evaluated by pyrosequencing, whereas additional repetitive DNA sequences were assessed using Illumina 450K methylation microarray. Melanoma patients exhibited a higher, albeit heterogeneous, LINE-1 methylation level compared with controls. Hereditary melanoma patients carrying CDKN2A mutations showed a hypermethylated pattern of both LINE-1 and repetitive DNA elements compared with other patients. In particular, the methylation level at one specific CpG of LINE-1 was found to be correlated with the occurrence of metastasis. Our data suggest that LINE-1 hypermethylation in peripheral blood of melanoma patients is a potential epigenetic biomarker for metastasis occurrence.

Indexed as

DNA MethylationLong Interspersed Nucleotide ElementsAdultBiomarkers, TumorCpG IslandsEpigenesis, GeneticFemaleGenes, p16Genetic Predisposition to DiseaseHumansMaleMelanomaMiddle AgedMutationRetrospective StudiesSkin NeoplasmsBiomarkers, Tumor

Identifiers

PMID25647737
PMCPMC4352068
OpenAlexW2105541548

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.