Evidence map›Paper›PMID 25647296›Full record

ArticlePloS one2015

Arabidopsis HFR1 is a potential nuclear substrate regulated by the Xanthomonas type III effector XopD(Xcc8004).

Choon Meng Tan, Meng-Ying Li, Pei-Yun Yang, Shu Heng Chang, Yi-Ping Ho, Hong Lin, Wen-Ling Deng, Jun-Yi Yang

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
8.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Review
  6. Review
  7. Review
  8. Article
  9. NopD ofFrontiers in microbiology · 2020
    Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Regulatory Proteolysis in Arabidopsis-Pathogen Interactions.International journal of molecular sciences · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Choon Meng TanInstitute of Biochemistry, National ChungHsing University, Taichung, Taiwan; Ph.D. Program in Microbial Genomics, National ChungHsing University and Academia Sinica, Taipei, Taiwan.
Meng-Ying LiInstitute of Biochemistry, National ChungHsing University, Taichung, Taiwan.
Pei-Yun YangInstitute of Biochemistry, National ChungHsing University, Taichung, Taiwan.
Shu Heng ChangInstitute of Biochemistry, National ChungHsing University, Taichung, Taiwan.
Yi-Ping HoInstitute of Biochemistry, National ChungHsing University, Taichung, Taiwan.
Hong LinInstitute of Biochemistry, National ChungHsing University, Taichung, Taiwan.
Wen-Ling DengDepartment of Plant Pathology, National ChungHsing University, Taichung, Taiwan.
Jun-Yi YangInstitute of Biochemistry, National ChungHsing University, Taichung, Taiwan; Ph.D. Program in Microbial Genomics, National ChungHsing University and Academia Sinica, Taipei, Taiwan; Institute of Biotechnology, National ChungHsing University, Taichung, Taiwan; NCHU-UCD Plant and Food Biotechnology Center, National ChungHsing University, Taichung, Taiwan; Agricultural Biotechnology Center, National ChungHsing University, Taichung, Taiwan.
National Chung Hsing University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

XopDXcc8004, a type III effector of Xanthomonas campestris pv. campestris (Xcc) 8004, is considered a shorter version of the XopD, which lacks the N-terminal domain. To understand the functions of XopDXcc8004, in planta, a transgenic approach combined with inducible promoter to analyze the effects of XopDXcc8004 in Arabidopsis was done. Here, the expression of XopDXcc8004, in Arabidopsis elicited the accumulation of host defense-response genes. These molecular changes were dependent on salicylic acid and correlated with lesion-mimic phenotypes observed in XVE::XopDXcc8004 transgenic plants. Moreover, XopDXcc8004 was able to desumoylate HFR1, a basic helix-loop-helix transcription factor involved in photomorphogenesis, through SUMO protease activity. Interestingly, the hfr1-201 mutant increased the expression of host defense-response genes and displayed a resistance phenotype to Xcc8004. These data suggest that HFR1 is involved in plant innate immunity and is potentially regulated by XopDXcc8004.

Indexed as

Gene Expression Regulation, PlantHost-Pathogen InteractionsArabidopsisArabidopsis ProteinsBacterial ProteinsDNA-Binding ProteinsMutationNuclear ProteinsPlant DiseasesPlants, Genetically ModifiedSalicylic AcidSmall Ubiquitin-Related Modifier ProteinsXanthomonas campestrisArabidopsis ProteinsAt1g02340 protein, ArabidopsisBacterial ProteinsDNA-Binding ProteinsNuclear ProteinsSalicylic AcidSmall Ubiquitin-Related Modifier Proteins

Identifiers

PMID25647296
PMCPMC4315394
OpenAlexW2066052510

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.