Evidence map›Paper›PMID 25647246›Full record

ArticleBiochemistry2015

Identification of destabilizing and stabilizing mutations of Ste2p, a G protein-coupled receptor in Saccharomyces cerevisiae.

Jeffrey Zuber, Shairy Azmy Danial, Sara M Connelly, Fred Naider, Mark E Dumont

Abstract read
In one paragraph

Article in Biochemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
  3. Functional plasticity and evolutionary adaptation of allosteric regulation.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  4. A Paradigm for Peptide Hormone-GPCR Analyses.Molecules (Basel, Switzerland) · 2020
    Review
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jeffrey ZuberDepartment of Biochemistry and Biophysics, University of Rochester School of Medicine and Dentistry , P.O. Box 712, Rochester, New York 14642, United States.
Shairy Azmy Danial
Sara M Connelly
Fred Naider
Mark E Dumont

Funding

Multi-Level Optimization of Membrane Proteins for CrystallographyU54GM094611 · NIGMS · HAUPTMAN-WOODWARD MEDICAL RESEARCH INST · PI DUMONT, MARK E. · 2010 to 2014
$6.3M
PEPTIDE/CELL INTERACTIONS IN SACCHAROMYCES CEREVISIAER01GM022087 · NIGMS · UNIVERSITY OF TENNESSEE KNOXVILLE · PI BECKER, JEFFREY M., NAIDER, FRED R · 1985 to 2011
$4.9M
G PROTEIN COUPLED RECEPTOR ACTIVATION STUDIED IN YEASTR01GM059357 · NIGMS · UNIVERSITY OF ROCHESTER · PI DUMONT, MARK E. · 1999 to 2009
$2.2M
Genetic Optimization of Membrane Protein Production for CrystallizationR01GM084083 · NIGMS · UNIVERSITY OF ROCHESTER · PI DUMONT, MARK E. · 2009 to 2012
$1.3M
Mechanisms of G Protein Coupled Receptor Signaling in the Yeast Pheromone PathwayR01GM114974 · NIGMS · UNIVERSITY OF ROCHESTER · PI DUMONT, MARK E. · 2015 to 2018
$1.2M
NIGMS NIH HHS R01 GM022087NIGMS NIH HHS R01 GM059357NIGMS NIH HHS R01 GM084083NIGMS NIH HHS R01GM084083NIGMS NIH HHS R01 GM114974NIGMS NIH HHS R01GM22087NIGMS NIH HHS U54GM09461NIGMS NIH HHS U54 GM094611
6 · The paper itself

Abstract

The isolation of mutations affecting the stabilities of transmembrane proteins is useful for enhancing the suitability of proteins for structural characterization and identification of determinants of membrane protein stability. We have pursued a strategy for the identification of stabilized variants of the yeast α-factor receptor Ste2p. Because it was not possible to screen directly for mutations providing thermal stabilization, we first isolated a battery of destabilized temperature-sensitive variants, based on loss of signaling function and decreased levels of binding of the fluorescent ligand, and then screened for intragenic second-site suppressors of these phenotypes. The initial screens recovered singly and multiply substituted mutations conferring temperature sensitivity throughout the predicted transmembrane helices of the receptor. All of the singly substituted variants exhibit decreases in cell-surface expression. We then screened randomly mutagenized libraries of clones expressing temperature-sensitive variants for second-site suppressors that restore elevated levels of binding sites for fluorescent ligand. To determine whether any of these were global suppressors, and thus likely stabilizing mutations, they were combined with different temperature-sensitive mutations. Eight of the suppressors exhibited the ability to reverse the defect in ligand binding of multiple temperature-sensitive mutations. Combining certain suppressors into a single allele resulted in levels of suppression greater than that seen with either suppressor alone. Solubilized receptors containing suppressor mutations in the absence of temperature-sensitive mutations exhibit a reduced tendency to aggregate during immobilization on an affinity matrix. Several of the suppressors also exhibit allele-specific behavior indicative of specific intramolecular interactions in the receptor.

Indexed as

MutationAmino Acid SubstitutionMutagenesis, Site-DirectedProtein StabilityProtein Structure, TertiaryReceptors, Mating FactorSaccharomyces cerevisiae ProteinsSignal TransductionTemperatureReceptors, Mating FactorSaccharomyces cerevisiae ProteinsSTE2 protein, S cerevisiae

Identifiers

PMID25647246
PMCPMC4405178

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.