Evidence map›Paper›PMID 25646845›Full record

ArticlePLoS pathogens2015

Crystal structures of the carboxyl cGMP binding domain of the Plasmodium falciparum cGMP-dependent protein kinase reveal a novel capping triad crucial for merozoite egress.

Jeong Joo Kim, Christian Flueck, Eugen Franz, Eduardo Sanabria-Figueroa, Eloise Thompson, Robin Lorenz, Daniela Bertinetti, David A Baker, Friedrich W Herberg, Choel Kim

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 36 citations in OpenAlex.

  1. Directly adopting inverse biosensors to image live cell enzyme activities in nanodomains.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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  4. Article
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  6. Article
  7. Malaria parasite egress at a glance.Journal of cell science · 2021
    Review
  8. Cyclic nucleotide selectivity of protein kinase G isozymes.Protein science : a publication of the Protein Society · 2021
    Review
  9. Keep a lid on it: A troika in kinase allostery.The Journal of biological chemistry · 2020
    Article
  10. Mechanism of allosteric inhibition in theThe Journal of biological chemistry · 2020
    Article
  11. Review
  12. Review
  13. Frontiers in microbiology · 2020
    Review
  14. Structures of the cGMP-dependent protein kinase in malaria parasites reveal a unique structural relay mechanism for activation.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  15. Article
  16. Infection and immunity · 2019
    Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Jeong Joo KimDepartment of Pharmacology, Baylor College of Medicine, Houston, Texas, United States of America; Department of Biochemistry, University of Kassel, Kassel, Hesse, Germany.
Christian FlueckFaculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London, United Kingdom.
Eugen FranzDepartment of Biochemistry, University of Kassel, Kassel, Hesse, Germany.
Eduardo Sanabria-FigueroaDepartment of Pharmacology, Baylor College of Medicine, Houston, Texas, United States of America.
Eloise ThompsonFaculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London, United Kingdom.
Robin LorenzDepartment of Biochemistry, University of Kassel, Kassel, Hesse, Germany.
Daniela BertinettiDepartment of Biochemistry, University of Kassel, Kassel, Hesse, Germany.
David A BakerFaculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London, United Kingdom.
Friedrich W HerbergDepartment of Biochemistry, University of Kassel, Kassel, Hesse, Germany.
Choel KimDepartment of Pharmacology, Baylor College of Medicine, Houston, Texas, United States of America; Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, Texas, United States of America.
Hesse (Germany) · DELondon School of Hygiene & Tropical Medicine · GBBaylor College of Medicine · USEmory University · USUniversity of Kassel · DE

Funding

Graduate Training in the Pharmacological StudiesT32GM008602 · NIGMS · EMORY UNIVERSITY · PI HALL, RANDY A. · 1996 to 2021
$5.1M
Targeting mechanisms of cGMP dependent protein kinases by peptide arrays and crysR01GM090161 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI KIM, CHOEL WOONG · 2010 to 2018
$2.9M
TARGETING CGMP KINASES TO DEVELOP NEW THERAPEUTICS FOR HYPERTENSIVE DISEASESR21HL111953 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI KIM, CHOEL WOONG · 2012 to 2013
$421k
Medical Research Council G10000779Medical Research Council G1000779NHLBI NIH HHS R21 HL111953NIGMS NIH HHS R01 GM090161NIGMS NIH HHS T32 GM008602Wellcome TrustWellcome Trust WT094752
6 · The paper itself

Abstract

The Plasmodium falciparum cGMP-dependent protein kinase (PfPKG) is a key regulator across the malaria parasite life cycle. Little is known about PfPKG's activation mechanism. Here we report that the carboxyl cyclic nucleotide binding domain functions as a "gatekeeper" for activation by providing the highest cGMP affinity and selectivity. To understand the mechanism, we have solved its crystal structures with and without cGMP at 2.0 and 1.9 Å, respectively. These structures revealed a PfPKG-specific capping triad that forms upon cGMP binding, and disrupting the triad reduces kinase activity by 90%. Furthermore, mutating these residues in the parasite prevents blood stage merozoite egress, confirming the essential nature of the triad in the parasite. We propose a mechanism of activation where cGMP binding allosterically triggers the conformational change at the αC-helix, which bridges the regulatory and catalytic domains, causing the capping triad to form and stabilize the active conformation.

Indexed as

Amino Acid SequenceCrystallography, X-RayCyclic GMP-Dependent Protein KinasesImmunoblottingLife Cycle StagesMerozoitesMolecular Sequence DataPlasmodium falciparumPolymerase Chain ReactionProtein ConformationProtozoan ProteinsTransfectionCyclic GMP-Dependent Protein KinasesProtozoan Proteins

Identifiers

PMID25646845
PMCPMC4412288
OpenAlexW2144151089

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.