Evidence map›Paper›PMID 25646755›Full record

ArticlePloS one2015

A colony multiplex quantitative PCR-Based 3S3DBC method and variations of it for screening DNA libraries.

Yang An, Atsushi Toyoda, Chen Zhao, Asao Fujiyama, Kiyokazu Agata

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Draft genome ofZoological letters · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Yang AnDepartment of Biophysics, Kyoto University, Kyoto, Kyoto, Japan.
Atsushi ToyodaComparative Genomics Laboratory, National Institute of Genetics, Mishima, Shizuoka, Japan.
Chen ZhaoSchool of Pharmacy, Fudan University, Shanghai, China.
Asao FujiyamaComparative Genomics Laboratory, National Institute of Genetics, Mishima, Shizuoka, Japan.
Kiyokazu AgataDepartment of Biophysics, Kyoto University, Kyoto, Kyoto, Japan.
Kyoto University · JPNational Institute of Genetics · JPFudan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A DNA library is a collection of DNA fragments cloned into vectors and stored individually in host cells, and is a valuable resource for molecular cloning, gene physical mapping, and genome sequencing projects. To take the best advantage of a DNA library, a good screening method is needed. After describing pooling strategies and issues that should be considered in DNA library screening, here we report an efficient colony multiplex quantitative PCR-based 3-step, 3-dimension, and binary-code (3S3DBC) method we used to screen genes from a planarian genomic DNA fosmid library. This method requires only 3 rounds of PCR reactions and only around 6 hours to distinguish one or more desired clones from a large DNA library. According to the particular situations in different research labs, this method can be further modified and simplified to suit their requirements.

Indexed as

Gene LibraryAnimalsMultiplex Polymerase Chain ReactionPlanariansTime Factors

Identifiers

PMID25646755
PMCPMC4315571
OpenAlexW2050652507

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.