Evidence map›Paper›PMID 25646490›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Copper economy in Chlamydomonas: prioritized allocation and reallocation of copper to respiration vs. photosynthesis.

Janette Kropat, Sean D Gallaher, Eugen I Urzica, Stacie S Nakamoto, Daniela Strenkert, Stephen Tottey, Andrew Z Mason, Sabeeha S Merchant

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 92 citations in OpenAlex.

  1. Article
  2. Microbial metal physiology: ions to ecosystems.Nature reviews. Microbiology · 2025
    Review
  3. The Elements of Life, Photosynthesis and Genomics.Journal of molecular biology · 2025
    Review
  4. A defined growth medium for trace metal limitation studies inbioRxiv : the preprint server for biology · 2025
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Copper Metabolism inFrontiers in cell and developmental biology · 2022
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Janette KropatDepartment of Chemistry and Biochemistry, and.
Sean D GallaherDepartment of Chemistry and Biochemistry, and.
Eugen I UrzicaDepartment of Chemistry and Biochemistry, and.
Stacie S NakamotoDepartment of Chemistry and Biochemistry, and.
Daniela StrenkertDepartment of Chemistry and Biochemistry, and.
Stephen TotteyDepartment of Chemistry and Biochemistry, and.
Andrew Z MasonInstitute for Integrated Research in Materials, Environments, and Societies, California State University, Long Beach, CA 90840.
Sabeeha S MerchantDepartment of Chemistry and Biochemistry, and Institute for Genomics and Proteomics, University of California, Los Angeles, CA 90095; and sabeeha@chem.ucla.edu.
California State University, Long Beach · USUniversity of California, Los Angeles · US

Funding

Nutritional Cu Signaling and HomeostasisR01GM042143 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SABEEHA MERCHANT · 1995 to 2026
$4.6M
Nutritional Copper Signaling and HomeostasisR37GM042143 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MERCHANT, SABEEHA · 2011 to 2020
$4.3M
Structural Insights into the Function of FrataxinR01DK068139 · NIDDK · WAYNE STATE UNIVERSITY · PI STEMMLER, TIMOTHY LOUIS · 2005 to 2015
$3.5M
CU-DEPENDENT TRANSCRIPTIONAL REGULATIONR29GM042143 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MERCHANT, SABEEHA · 1989 to 1993
–
NIDDK NIH HHS R01 DK068139NIGMS NIH HHS GM42143NIGMS NIH HHS R01 GM042143NIGMS NIH HHS R37 GM042143
6 · The paper itself

Abstract

Inorganic elements, although required only in trace amounts, permit life and primary productivity because of their functions in catalysis. Every organism has a minimal requirement of each metal based on the intracellular abundance of proteins that use inorganic cofactors, but elemental sparing mechanisms can reduce this quota. A well-studied copper-sparing mechanism that operates in microalgae faced with copper deficiency is the replacement of the abundant copper protein plastocyanin with a heme-containing substitute, cytochrome (Cyt) c6. This switch, which is dependent on a copper-sensing transcription factor, copper response regulator 1 (CRR1), dramatically reduces the copper quota. We show here that in a situation of marginal copper availability, copper is preferentially allocated from plastocyanin, whose function is dispensable, to other more critical copper-dependent enzymes like Cyt oxidase and a ferroxidase. In the absence of an extracellular source, copper allocation to Cyt oxidase includes CRR1-dependent proteolysis of plastocyanin and quantitative recycling of the copper cofactor from plastocyanin to Cyt oxidase. Transcriptome profiling identifies a gene encoding a Zn-metalloprotease, as a candidate effecting copper recycling. One reason for the retention of genes encoding both plastocyanin and Cyt c6 in algal and cyanobacterial genomes might be because plastocyanin provides a competitive advantage in copper-depleted environments as a ready source of copper.

Indexed as

CeruloplasminChlamydomonasCopperCytochromes c6Electron Transport Complex IVMetalloendopeptidasesOxygen ConsumptionPhotosynthesisPlastocyaninCeruloplasminCopperCytochromes c6Electron Transport Complex IVMetalloendopeptidasesPlastocyaninacclimationcopper homeostasiscopper storemetalRNA-seq

Identifiers

PMID25646490
PMCPMC4352834
OpenAlexW2136833740

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.