Evidence map›Paper›PMID 25646489›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

CryoEM and mutagenesis reveal that the smallest capsid protein cements and stabilizes Kaposi's sarcoma-associated herpesvirus capsid.

Xinghong Dai, Danyang Gong, Yuchen Xiao, Ting-Ting Wu, Ren Sun, Z Hong Zhou

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. A Capsid Structure ofViruses · 2022
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  5. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 4 countries.

Xinghong DaiDepartment of Microbiology, Immunology and Molecular Genetics, The California NanoSystems Institute, Bioengineering Program, and.
Danyang GongDepartment of Molecular and Medical Pharmacology, University of California, Los Angeles, CA 90095.
Yuchen XiaoDepartment of Microbiology, Immunology and Molecular Genetics.
Ting-Ting WuDepartment of Molecular and Medical Pharmacology, University of California, Los Angeles, CA 90095.
Ren SunThe California NanoSystems Institute, Bioengineering Program, and Department of Molecular and Medical Pharmacology, University of California, Los Angeles, CA 90095 rsun@mednet.ucla.edu hong.zhou@ucla.edu.
Z Hong ZhouDepartment of Microbiology, Immunology and Molecular Genetics, The California NanoSystems Institute, Bioengineering Program, and rsun@mednet.ucla.edu hong.zhou@ucla.edu.
Bioengineering Center · RUUniversity of California, Los Angeles · USBipar · FR

Funding

UCLA Clinical and Translational Science InstituteUL1TR000124 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2012 to 2015
$57.0M
Genome Structure, Transcription and Packaging of dsRNA VirusesR01AI094386 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Z Hong ZHOU · 2012 to 2026
$6.0M
High-Resolution CryoEM Reconstruction of Large ComplexesR01GM071940 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ZHOU, Z HONG · 2006 to 2025
$5.0M
Reactivation of Kaposi's Sarcoma-Associated HerpesvirusR01CA091791 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SUN, REN · 2001 to 2017
$4.4M
Develop a therapeutic vaccine approach by removing viral immune evasionR01DE023591 · NIDCR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SUN, REN · 2013 to 2017
$1.9M
HIGH-END CRYOEM INSTRUMENT FOR UCLA ELECTRON IMAGING CTR FOR NANOMACHINES: AIDSS10RR023057 · NCRR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ZHOU, Z HONG · 2006 to 2006
$1.6M
STRUCTURAL STUDIES OF HUMAN CYTOMEGALOVIRUSR01AI046420 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ZHOU, Z HONG · 2000 to 2004
$1.1M
Direct Detection Device for atomic resolution cryoEM of macromolecular complexesS10OD018111 · OD · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ZHOU, Z HONG · 2014 to 2014
$598k
NCATS NIH HHS UL1 TR000124NCI NIH HHS R01 CA091791NCRR NIH HHS 1S10RR23057NCRR NIH HHS S10 RR023057NIAID NIH HHS AI046420NIAID NIH HHS AI094386NIAID NIH HHS R01 AI046420NIAID NIH HHS R01 AI094386NIDCR NIH HHS DE023591NIDCR NIH HHS R01 DE023591NIGMS NIH HHS GM071940NIGMS NIH HHS R01 GM071940NIH HHS 1S10OD018111NIH HHS S10 OD018111
6 · The paper itself

Abstract

With just one eighth the size of the major capsid protein (MCP), the smallest capsid protein (SCP) of human tumor herpesviruses--Kaposi's sarcoma-associated herpesvirus (KSHV) and Epstein-Barr virus (EBV)--is vital to capsid assembly, yet its mechanism of action is unknown. Here, by cryoEM of KSHV at 6-Å resolution, we show that SCP forms a crown on each hexon and uses a kinked helix to cross-link neighboring MCP subunits. SCP-null mutation decreased viral titer by 1,000 times and impaired but did not fully abolish capsid assembly, indicating an important but nonessential role of SCP. By truncating the C-terminal half of SCP and performing cryoEM reconstruction, we demonstrate that SCP's N-terminal half is responsible for the observed structure and function whereas the C-terminal half is flexible and dispensable. Serial truncations further highlight the critical importance of the N-terminal 10 aa, and cryoEM reconstruction of the one with six residues truncated localizes the N terminus of SCP in the cryoEM density map and enables us to construct a pseudoatomic model of SCP. Fitting of this SCP model and a homology model for the MCP upper domain into the cryoEM map reveals that SCP binds MCP largely via hydrophobic interactions and the kinked helix of SCP bridges over neighboring MCPs to form noncovalent cross-links. These data support a mechanistic model that tumor herpesvirus SCP reinforces the capsid for genome packaging, thus acting as a cementing protein similar to those found in many bacteriophages.

Indexed as

MutagenesisAmino Acid SequenceBase SequenceCapsidCell LineCryoelectron MicroscopyDNA PrimersHerpesvirus 8, HumanHumansMolecular Sequence DataProtein ConformationSequence Homology, Amino AcidDNA Primerscapsid assemblycapsid stabilizationcementing proteinKaposi's sarcoma-associated herpesvirussmallest capsid protein

Identifiers

PMID25646489
PMCPMC4343125
OpenAlexW2081492015

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.