Evidence map›Paper›PMID 25646031›Full record

ArticleTransactions of the American Ophthalmological Society2014

Silencing of tuberin enhances photoreceptor survival and function in a preclinical model of retinitis pigmentosa (an american ophthalmological society thesis).

Stephen H Tsang, Lawrence Chan, Yi-Ting Tsai, Wen-Hsuan Wu, Chun-Wei Hsu, Jin Yang, Joaquin Tosi, Katherine J Wert, Richard J Davis, Vinit B Mahajan

Open access · greenAbstract read
In one paragraph

Article in Transactions of the American Ophthalmological Society, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Genetic Rescue Reverses Microglial Activation in Preclinical Models of Retinitis Pigmentosa.Molecular therapy : the journal of the American Society of Gene Therapy · 2018
    Article
  7. Reprogramming the metabolome rescues retinal degeneration.Cellular and molecular life sciences : CMLS · 2018
    Review
  8. Review
  9. Structural modeling of a novelMolecular genetics & genomic medicine · 2017
    Article
  10. Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Stephen H TsangInstitute of Human Nutrition, Department of Pathology and Cell Biology and the Department of Ophthalmology, Columbia University, New York, New York.
Lawrence ChanDepartment of Ophthalmology, Columbia University, New York, New York.
Yi-Ting TsaiDepartment of Ophthalmology, Columbia University, New York, New York.
Wen-Hsuan WuDepartment of Ophthalmology, Columbia University, New York, New York.
Chun-Wei HsuDepartment of Ophthalmology, Columbia University, New York, New York.
Jin YangDepartment of Ophthalmology, Columbia University, New York, New York; and Tianjin Medical University Eye Hospital, Tianjin, China.
Joaquin TosiDepartment of Ophthalmology, Columbia University, New York, New York; and Kresge Eye Institute, Wayne State University, Detroit, Michigan.
Katherine J WertDepartment of Ophthalmology, Columbia University, New York, New York; and Whitehead Institute for Biomedical Research, Massachusetts Institute of Technology, Cambridge, Massachusetts.
Richard J DavisDepartment of Ophthalmology, Columbia University, New York, New York; and Neural Stem Cell Institute, Rensselaer, New York.
Vinit B MahajanOmics Lab, Department of Ophthalmology and Visual Sciences, University of Iowa, Iowa City, Iowa.
Columbia University · US

Funding

Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Parisa Tehranifar · 1985 to 2026
$115.3M
Instrumentation, Fabrication, and Design CoreP30EY019007 · NEI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Xin Zhang · 2010 to 2026
$12.9M
Toward mechanism- and gene-based therapies for retinal degenerationR01EY018213 · NEI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Stephen H Tsang · 2008 to 2026
$6.6M
Molecular Genetics of Dominant Neovascular Inflammatory VitreoretinopathyK08EY020530 · NEI · UNIVERSITY OF IOWA · PI MAHAJAN, VINIT B · 2011 to 2015
$1.1M
NCI NIH HHS 5P30CA013696NCI NIH HHS P30 CA013696NEI NIH HHS 5P30EY019007NEI NIH HHS K08 EY020530NEI NIH HHS K08EY020530NEI NIH HHS P30 EY019007NEI NIH HHS R01 EY018213NEI NIH HHS R01EY018213
6 · The paper itself

Abstract

purposeTo assess the functional consequences of silencing of tuberin, an inhibitor of the mTOR signaling pathway, in a preclinical model of retinitis pigmentosa (RP) in order to test the hypothesis that insufficient induction of the protein kinase B (PKB)-regulated tuberin/mTOR self-survival pathway initiates apoptosis.

methodsIn an unbiased genome-scale approach, kinase peptide substrate arrays were used to analyze self-survival pathways at the onset of photoreceptor degeneration. The mutant Pde6b(H620Q)/Pde6b(H620Q) at P14 and P18 photoreceptor outer segment (OS) lysates were labeled with P-ATP and hybridized to an array of 1,164 different synthetic peptide substrates. At this stage, OS of Pde6b(H620Q)/Pde6b(H620Q) rods are morphologically normal. In vitro kinase assays and immunohistochemistry were used to validate phosphorylation. Short hairpin RNA (shRNA) gene silencing was used to validate tuberin's role in regulating survival.

resultsAt the onset of degeneration, 162 peptides were differentially phosphorylated. Protein kinases A, G, C (AGC kinases), and B exhibited increased activity in both peptide array and in vitro kinase assays. Immunohistochemical data confirmed altered phosphorylation patterns for phosphoinositide-dependent kinase-1 (PDK1), ribosomal protein S6 (RPS6), and tuberin. Tuberin gene silencing rescued photoreceptors from degeneration.

conclusionsPhosphorylation of tuberin and RPS6 is due to the upregulated activity of PKB. PKB/tuberin cell growth/survival signaling is activated before the onset of degeneration. Substrates of the AGC kinases in the PKB/tuberin pathway are phosphorylated to promote cell survival. Knockdown of tuberin, the inhibitor of the mTOR pathway, increased photoreceptor survival and function in a preclinical model of RP.

Indexed as

AnimalsApoptosisDisease Models, AnimalGene SilencingMiceMice, Mutant StrainsPhosphorylationPhosphotransferasesProto-Oncogene Proteins c-aktRetinitis PigmentosaRibosomal Protein S6Signal TransductionTuberous Sclerosis Complex 2 ProteinTumor Suppressor ProteinsPhosphotransferasesProto-Oncogene Proteins c-aktRibosomal Protein S6TSC2 protein, humanTuberous Sclerosis Complex 2 ProteinTumor Suppressor Proteins

Identifiers

PMID25646031
PMCPMC4311672
OpenAlexW2186505887

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.