Evidence map›Paper›PMID 25645700›Full record

ReviewGenomics2015

Transcriptome of the human retina, retinal pigmented epithelium and choroid.

Lifeng Tian, Krista L Kazmierkiewicz, Anita S Bowman, Mingyao Li, Christine A Curcio, Dwight E Stambolian

Abstract readReview
In one paragraph

Review in Genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

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  14. Single-cell transcriptomics of the human retinal pigment epithelium and choroid in health and macular degeneration.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Lifeng TianCenter for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, Pa 19104, USA. Electronic address: tianl@email.chop.edu.
Krista L KazmierkiewiczDepartment of Ophthalmology, University of Pennsylvania, Philadelphia, Pa 19104, USA. Electronic address: kristakazmar@gmail.com.
Anita S BowmanDepartment of Ophthalmology, University of Pennsylvania, Philadelphia, Pa 19104, USA. Electronic address: anitabow@mail.med.upenn.edu.
Mingyao LiDepartment of Biostatistics and Epidemiology, University of Pennsylvania, Philadelphia, Pa 19104, USA. Electronic address: mingyao@mail.med.upenn.edu.
Christine A CurcioDepartment of Ophthalmology, University of Alabama School of Medicine, Birmingham, Al 35294, USA. Electronic address: curcio@uab.edu.
Dwight E StambolianDepartment of Ophthalmology, University of Pennsylvania, Philadelphia, Pa 19104, USA. Electronic address: stamboli@mail.med.upenn.edu.

Funding

Scientific TransparencyP30EY001583 · NEI · UNIVERSITY OF PENNSYLVANIA · PI Qi N Cui · 1985 to 2026
$19.5M
Genetic Epidemiology of Age-Related Macular Degeneration in the Older Order AmishR01EY023164 · NEI · UNIVERSITY OF PENNSYLVANIA · PI PERICAK-VANCE, MARGARET A., STAMBOLIAN, DWIGHT EDWARD · 2013 to 2017
$6.2M
QUANTITATIVE ANAYLSIS OF AGING RETINAR01EY006109 · NEI · UNIVERSITY OF WASHINGTON · PI CURCIO, CHRISTINE A · 1986 to 2012
$3.5M
Genetic Epidemiology of Refractive ErrorR01EY020483 · NEI · UNIVERSITY OF PENNSYLVANIA · PI STAMBOLIAN, DWIGHT EDWARD · 2010 to 2014
$2.9M
NEI NIH HHS EY020483NEI NIH HHS EY023164NEI NIH HHS NEI EY06109NEI NIH HHS P30 EY001583NEI NIH HHS R01 EY006109NEI NIH HHS R01 EY020483NEI NIH HHS R01 EY023164
6 · The paper itself

Abstract

The retina and its adjacent supporting tissues - retinal pigmented epithelium (RPE) and choroid - are critical structures in human eyes required for normal visual perception. Abnormal changes in these layers have been implicated in diseases such as age-related macular degeneration and glaucoma. With the advent of high-throughput methods, such as serial analysis of gene expression, cDNA microarray, and RNA sequencing, there is unprecedented opportunity to facilitate our understanding of the normal retina, RPE, and choroid. This information can be used to identify dysfunction in age-related macular degeneration and glaucoma. In this review, we describe the current status in our understanding of these transcriptomes through the use of high-throughput techniques.

Indexed as

TranscriptomeAgingAnimalsChoroidEpitheliumGene Expression ProfilingHigh-Throughput Nucleotide SequencingHumansPigmentationRetinaRNA SplicingAge-related macular degenerationcDNA microarrayChoroidGlaucomaRetinaRetinal pigmented epitheliumRNA-SeqSerial analysis of gene expressionTranscriptome

Identifiers

PMID25645700
PMCPMC4404213

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.