Evidence map›Paper›PMID 25645690›Full record

ArticleBMC developmental biology2015

Imaging the Drosophila retina: zwitterionic buffers PIPES and HEPES induce morphological artifacts in tissue fixation.

Jing Nie, Simpla Mahato, Andrew C Zelhof

Open access · hybridAbstract read
In one paragraph

Article in BMC developmental biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Jing NieDepartment of Biology, Indiana University, 1001 East Third St, Bloomington, IN, 47405, USA. jingnie@umail.iu.edu.
Simpla MahatoDepartment of Biology, Indiana University, 1001 East Third St, Bloomington, IN, 47405, USA. smahato@indiana.edu.
Andrew C ZelhofDepartment of Biology, Indiana University, 1001 East Third St, Bloomington, IN, 47405, USA. azelhof@indiana.edu.
Indiana University Bloomington · US

Funding

Drosophila screens to isolate genes that modulate outer-segment membrane disc bioR21EY024125 · NEI · TRUSTEES OF INDIANA UNIVERSITY · PI ZELHOF, ANDREW · 2014 to 2015
$415k
NEI NIH HHS R21 EY024125NEI NIH HHS R21EY024125
6 · The paper itself

Abstract

backgroundTissue fixation is crucial for preserving the morphology of biological structures and cytological details to prevent postmortem degradation and autolysis. Improper fixation conditions could lead to artifacts and thus incorrect conclusions in immunofluorescence or histology experiments. To resolve reported structural anomalies with respect to Drosophila photoreceptor cell organization we developed and utilized a combination of live imaging and fixed samples to investigate the exact biogenesis and to identify the underlying source for the reported discrepancies in structure.

resultsWe found that piperazine-N,N'-bis(ethanesulfonic acid) (PIPES) and 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES), two zwitterionic buffers commonly used in tissue fixation, can cause severe lumen and cell morphological defects in Drosophila pupal and adult retina; the inter-rhabdomeral lumen becomes dilated and the photoreceptor cells are significantly reduced in size. Correspondingly, the localization pattern of Eyes shut (EYS), a luminal protein, is severely altered. In contrast, tissues fixed in the phosphate buffered saline (PBS) buffer results in lumen and cell morphologies that are consistent with live imaging.

conclusionsWe suggest that PIPES and HEPES buffers should be utilized with caution for fixation when examining the interplay between cells and their extracellular environment, especially in Drosophila pupal and adult retina research.

Indexed as

Alkanesulfonic AcidsBuffersHEPESPiperazinesTissue FixationAnimalsAnimals, Genetically ModifiedArtifactsDrosophilaRetinaAlkanesulfonic AcidsBuffersHEPESpiperazine-N,N'-bis(2-ethanesulfonic acid)Piperazines

Identifiers

PMID25645690
PMCPMC4320506
OpenAlexW2018594297

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.