Evidence map›Paper›PMID 25645681›Full record

ArticleDevelopmental biology2015

miR-216a regulates snx5, a novel notch signaling pathway component, during zebrafish retinal development.

Abigail F Olena, Mahesh B Rao, Elizabeth J Thatcher, Shu-Yu Wu, James G Patton

Open access · hybridAbstract read
In one paragraph

Article in Developmental biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
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  4. MicroRNAs in the Mouse Developing Retina.International journal of molecular sciences · 2023
    Review
  5. Review
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  7. Article
  8. miRNAs and Müller Glia Reprogramming During Retina Regeneration.Frontiers in cell and developmental biology · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Abigail F Olena *Department of Biological Sciences, Vanderbilt University, Nashville, TN.
Mahesh B Rao *Department of Biological Sciences, Vanderbilt University, Nashville, TN.
Elizabeth J ThatcherDepartment of Biological Sciences, Vanderbilt University, Nashville, TN.
Shu-Yu WuDepartment of Biological Sciences, Vanderbilt University, Nashville, TN.
James G PattonDepartment of Biological Sciences, Vanderbilt University, Nashville, TN.
Vanderbilt University · US

Funding

TRAINING PROGRAM IN CELLULAR, BIOCHEMICAL, &MOLECULAR ST32GM008554 · NIGMS · VANDERBILT UNIVERSITY · PI PATTON, JAMES G. · 1995 to 2020
$7.4M
Training Program in Stem Cell and Regenerative Developmental BiologyT32HD007502 · NICHD · VANDERBILT UNIVERSITY · PI WRIGHT, CHRISTOPHER V · 1997 to 2022
$5.4M
A newly discovered feed-forward mechanism controls photoreceptor fateR01EY024354 · NEI · VANDERBILT UNIVERSITY · PI PATTON, JAMES G. · 2014 to 2016
$1.3M
Analysis of miRNA Function During Eye Development and Retinal RegenerationR21EY019759 · NEI · VANDERBILT UNIVERSITY · PI PATTON, JAMES G. · 2010 to 2011
$414k
NEI NIH HHS R01 EY024354NEI NIH HHS R01EY024354NEI NIH HHS R21 EY019759NEI NIH HHS R21EY019759NICHD NIH HHS T32 HD007502NICHD NIH HHS T32HD007502NIGMS NIH HHS T32 GM008554
6 · The paper itself

Abstract

Precise regulation of Notch signaling is essential for normal vertebrate development. Mind bomb (Mib) is a ubiquitin ligase that is required for activation of Notch by Notch׳s ligand, Delta. Sorting Nexin 5 (SNX5) co-localizes with Mib and Delta complexes and has been shown to directly bind to Mib. We show that microRNA-216a (miR-216a) is expressed in the retina during early development and regulates snx5 to precisely regulate Notch signaling. miR-216a and snx5 have complementary expression patterns. Knocking down miR-216a and/or overexpression of snx5 resulted in increased Notch activation. Conversely, knocking down snx5 and/or miR-216a overexpression caused a decrease in Notch activation. We propose a model in which SNX5, precisely controlled by miR-216a, is a vital partner of Mib in promoting endocytosis of Delta and subsequent activation of Notch signaling.

Indexed as

Analysis of VarianceAnimalsCloning, MolecularDNA PrimersGene Expression ProfilingGene Expression Regulation, DevelopmentalGene Knockdown TechniquesImage Processing, Computer-AssistedImmunoblottingIn Situ HybridizationIntracellular Signaling Peptides and ProteinsMembrane ProteinsMicroarray AnalysisMicroRNAsModels, BiologicalReceptors, Notchdelta proteinDNA PrimersIntracellular Signaling Peptides and ProteinsMembrane Proteinsmib1 protein, zebrafishMicroRNAsMIRN216 microRNA, zebrafishReceptors, NotchSnx5 protein, zebrafishSorting NexinsUbiquitin-Protein LigasesZebrafish ProteinsmicroRNAmiR-216aNotch signalingRetinaSorting Nexin 5Zebrafish

Identifiers

PMID25645681
PMCPMC4361363
OpenAlexW2005290269

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.