Evidence map›Paper›PMID 25645679›Full record

ArticleDNA repair2015

Suppression of oxidative phosphorylation in mouse embryonic fibroblast cells deficient in apurinic/apyrimidinic endonuclease.

Rangaswamy Suganya, Anirban Chakraborty, Sumitra Miriyala, Tapas K Hazra, Tadahide Izumi

Open access · greenAbstract read
In one paragraph

Article in DNA repair, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. A Novel HypomorphicAntioxidants & redox signaling · 2023
    Article
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Rangaswamy SuganyaGraduate Center for Toxicology, University of Kentucky, Lexington, KY 40536 USA.
Anirban ChakrabortyDepartment of Internal Medicine, University of Texas Medical Branch, TX 77555, USA.
Sumitra MiriyalaGraduate Center for Toxicology, University of Kentucky, Lexington, KY 40536 USA; Department of Cellular Biology and Anatomy, LSU Health Sciences Center, Shreveport, LA 71130 USA.
Tapas K HazraDepartment of Internal Medicine, University of Texas Medical Branch, TX 77555, USA.
Tadahide IzumiGraduate Center for Toxicology, University of Kentucky, Lexington, KY 40536 USA. Electronic address: t.izumi@uky.edu.
The Graduate Center, CUNY · USThe University of Texas Medical Branch at Galveston · USUniversity of Kentucky · US

Funding

University of Kentucky Markey Cancer Center Support Grant ECIA SupplementP30CA177558 · NCI · UNIVERSITY OF KENTUCKY · PI Bernard Mark Evers · 2013 to 2026
$38.3M
STRUCTURE AND REGULATION OF DNA REPAIR GENES OF MAMMALSR01CA053791 · NCI · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI MITRA, SANKAR · 1991 to 2011
$4.0M
Preferential single-strand break repair in the active genes of mammalian cellsR01NS073976 · NINDS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI HAZRA, TAPAS K · 2012 to 2021
$3.3M
Repair of oxidative DNA damage in mammalian cellsR01CA098664 · NCI · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI IZUMI, TADAHIDE · 2003 to 2013
$2.4M
Mechanism of DNA strand-break repair deficiency in Huntington's diseaseR01NS096305 · NINDS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI HAZRA, TAPAS K, SARKAR, PARTHA S · 2016 to 2020
$2.3M
DNA double strand break repair deficiency and neurodegenerationR56NS073976 · NINDS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI HAZRA, TAPAS K · 2024 to 2024
$536k
Repair of oxidative DNA damage in mammalian cellsR56CA098664 · NCI · LSU HEALTH SCIENCES CENTER · PI IZUMI, TADAHIDE · 2008 to 2008
$227k
NCI NIH HHS CA098664NCI NIH HHS CA53791NCI NIH HHS P30 CA177558NCI NIH HHS R01 CA053791NCI NIH HHS R01 CA098664NCI NIH HHS R56 CA098664NINDS NIH HHS NS073976NINDS NIH HHS R01 NS073976NINDS NIH HHS R01 NS096305NINDS NIH HHS R56 NS073976
6 · The paper itself

Abstract

The mammalian apurinic/apyrimidinic (AP) endonuclease 1 (APE1) is an essential DNA repair/gene regulatory protein. Decrease of APE1 in cells by inducible shRNA knockdown or by conditional gene knockout caused apoptosis. Here we succeeded in establishing a unique mouse embryonic fibroblast (MEF) line expressing APE1 at a level far lower than those achieved with shRNA knockdown. The cells, named MEF(la) (MEF(lowAPE1)), were hypersensitive to methyl methanesulfonate (MMS), and showed little activity for repairing AP-sites and MMS induced DNA damage. While these results were consistent with the essential role of APE1 in repair of AP sites, the MEF(la) cells grew normally and the basal activation of poly(ADP-ribose) polymerases in MEF(la) was lower than that in the wild-type MEF (MEF(wt)), indicating the low DNA damage stress in MEF(la) under the normal growth condition. Oxidative phosphorylation activity in MEF(la) was lower than in MEF(wt), while the glycolysis rates in MEF(la) were higher than in MEF(wt). In addition, we observed decreased intracellular oxidative stress in MEF(la). These results suggest that cells with low APE1 reversibly suppress mitochondrial respiration and thereby reduce DNA damage stress and increases the cell viability.

Indexed as

Oxidative StressAnimalsCell LineCell RespirationCells, CulturedCell SurvivalDNA-(Apurinic or Apyrimidinic Site) LyaseDNA RepairFibroblastsGene Expression RegulationGlycolysisHCT116 CellsHumansMiceMice, KnockoutMice, TransgenicAPEX1 protein, humanApex1 protein, mouseDNA-(Apurinic or Apyrimidinic Site) LyasePoly(ADP-ribose) PolymerasesAP endonuclease 1DNA repairEndogenous DNA damageOxidative phosphorylation

Identifiers

PMID25645679
PMCPMC4845732
OpenAlexW2024689707

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.