Evidence map›Paper›PMID 25645367›Full record

ArticleProteins2015

Identification of bacterial guanylate cyclases.

Min-Hyung Ryu, Hwan Youn, In-Hye Kang, Mark Gomelsky

Erratum issuedAbstract read
In one paragraph

Article in Proteins, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Control of cell division by anbioRxiv : the preprint server for biology · 2026
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Min-Hyung RyuDepartment of Molecular Biology, University of Wyoming, Laramie, Wyoming, 82071.
Hwan Youn
In-Hye Kang
Mark Gomelsky

Funding

Understanding of a Family of Bacterial Transcription FactorsR15AI101919 · NIAID · CALIFORNIA STATE UNIVERSITY FRESNO · PI YOUN, HWAN · 2012 to 2012
$415k
Near-infrared light activated protein photoswitchesR21CA167862 · NCI · UNIVERSITY OF WYOMING · PI GOMELSKY, MARK · 2012 to 2013
$324k
NCI NIH HHS 5R21CA167862NCI NIH HHS R21 CA167862NIAID NIH HHS 1R15AI101919-01NIAID NIH HHS R15 AI101919
6 · The paper itself

Abstract

The ability of bacteria to use cGMP as a second messenger has been controversial for decades. Recently, nucleotide cyclases from Rhodospirillum centenum, GcyA, and Xanthomonas campestris, GuaX, have been shown to possess guanylate cyclase activities. Enzymatic activities of these guanylate cyclases measured in vitro were low, which makes interpretation of the assays ambiguous. Protein sequence analysis at present is insufficient to distinguish between bacterial adenylate and guanylate cyclases, both of which belong to nucleotide cyclases of type III. We developed a simple method for discriminating between guanylate and adenylate cyclase activities in a physiologically relevant bacterial system. The method relies on the use of a mutant cAMP receptor protein, CRPG , constructed here. While wild-type CRP is activated exclusively by cAMP, CRPG can be activated by either cAMP or cGMP. Using CRP- and CRPG -dependent lacZ expression in two E. coli strains, we verified that R. centenum GcyA and X. campestris GuaX have primarily guanylate cyclase activities. Among two other bacterial nucleotide cyclases tested, one, GuaA from Azospillrillum sp. B510, proved to have guanylate cyclase activity, while the other one, Bradyrhizobium japonicum CyaA, turned out to function as an adenylate cyclase. The results obtained with this reporter system were in excellent agreement with direct measurements of cyclic nucleotides secreted by E. coli expressing nucleotide cyclase genes. The simple genetic screen developed here is expected to facilitate identification of bacterial guanylate cyclases and engineering of guanylate cyclases with desired properties.

Indexed as

Adenylyl CyclasesBacterial ProteinsCyclic GMPEnzyme AssaysGuanylate CyclaseAdenylyl CyclasesBacterial ProteinsCyclic GMPGuanylate CyclasecAMPcGMPEscherichia colinucleotide cyclasesecond messengersignal transduction

Identifiers

PMID25645367
PMCPMC4644428

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.