Evidence map›Paper›PMID 25645207›Full record

ArticleThe Journal of antimicrobial chemotherapy2015

Novel gentamicin resistance genes in Campylobacter isolated from humans and retail meats in the USA.

Shaohua Zhao, Sampa Mukherjee, Yuansha Chen, Cong Li, Shenia Young, Melissa Warren, Jason Abbott, Sharon Friedman, Claudine Kabera, Maria Karlsson and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of antimicrobial chemotherapy, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
9.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 62 citations in OpenAlex.

  1. InvestigatingVeterinary medicine international · 2026
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  4. The Global Challenge ofTropical medicine and infectious disease · 2025
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  6. The Transmission ofPathogens (Basel, Switzerland) · 2024
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  7. Species Delineation and Comparative Genomics within theJournal of clinical microbiology · 2023
    Review
  8. Antibiotic Resistance inAntibiotics (Basel, Switzerland) · 2023
    Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Microbiota from Specific Pathogen-Free Mice ReducesPathogens (Basel, Switzerland) · 2021
    Article
  15. Prediction of antimicrobial resistance in clinical Campylobacter jejuni isolates from whole-genome sequencing data.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2021
    Article
  16. Core Genome MLST for Source Attribution ofFrontiers in microbiology · 2021
    Article
  17. Review
  18. Article
  19. Highly Prevalent Multidrug-ResistantFrontiers in microbiology · 2021
    Article
  20. Whole Resistome Analysis inFrontiers in microbiology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Shaohua ZhaoDivision of Animal and Food Microbiology, Office of Research, Center for Veterinary Medicine, US Food and Drug Administration, Laurel, Maryland, USA shaohua.zhao@fda.hhs.gov.
Sampa MukherjeeDivision of Animal and Food Microbiology, Office of Research, Center for Veterinary Medicine, US Food and Drug Administration, Laurel, Maryland, USA.
Yuansha ChenDivision of Animal and Food Microbiology, Office of Research, Center for Veterinary Medicine, US Food and Drug Administration, Laurel, Maryland, USA.
Cong LiDivision of Animal and Food Microbiology, Office of Research, Center for Veterinary Medicine, US Food and Drug Administration, Laurel, Maryland, USA.
Shenia YoungDivision of Animal and Food Microbiology, Office of Research, Center for Veterinary Medicine, US Food and Drug Administration, Laurel, Maryland, USA.
Melissa WarrenDivision of Animal and Food Microbiology, Office of Research, Center for Veterinary Medicine, US Food and Drug Administration, Laurel, Maryland, USA.
Jason AbbottDivision of Animal and Food Microbiology, Office of Research, Center for Veterinary Medicine, US Food and Drug Administration, Laurel, Maryland, USA.
Sharon FriedmanDivision of Animal and Food Microbiology, Office of Research, Center for Veterinary Medicine, US Food and Drug Administration, Laurel, Maryland, USA.
Claudine KaberaDivision of Animal and Food Microbiology, Office of Research, Center for Veterinary Medicine, US Food and Drug Administration, Laurel, Maryland, USA.
Maria KarlssonDivision of Foodborne, Waterborne, and Environmental Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.
Patrick F McDermottDivision of Animal and Food Microbiology, Office of Research, Center for Veterinary Medicine, US Food and Drug Administration, Laurel, Maryland, USA.
United States Food and Drug Administration · USCenter for Veterinary Medicine · USWaterborne Environmental (United States) · US

Funding

Intramural CDC HHS CC999999
6 · The paper itself

Abstract

objectivesTo understand the molecular epidemiology of gentamicin-resistant Campylobacter and investigate aminoglycoside resistance mechanisms.

methodsOne-hundred-and-fifty-one gentamicin-resistant Campylobacter isolates from humans (n = 38 Campylobacter jejuni; n = 41, Campylobacter coli) and retail chickens (n = 72 C. coli), were screened for the presence of gentamicin resistance genes by PCR and subtyped using PFGE. A subset of the isolates (n = 41) was analysed using WGS.

resultsNine variants of gentamicin resistance genes were identified: aph(2″)-Ib, Ic, Ig, If, If1, If3, Ih, aac(6')-Ie/aph(2″)-Ia and aac(6')-Ie/aph(2″)-If2. The aph(2″)-Ib, Ic, If1, If3, Ih and aac(6')-Ie/aph(2″)-If2 variants were identified for the first time in Campylobacter. Human isolates showed more diverse aminoglycoside resistance genes than did retail chicken isolates, in which only aph(2″)-Ic and -Ig were identified. The aph(2″)-Ig gene was only gene shared by C. coli isolates from human (n = 27) and retail chicken (n = 69). These isolates displayed the same resistance profile and similar PFGE patterns, suggesting that contaminated retail chicken was probably the source of human C. coli infections. Human isolates were genetically diverse and generally more resistant than the retail chicken isolates. The most frequent co-resistance was to tetracycline (78/79, 98.7%), followed by ciprofloxacin/nalidixic acid (46/79, 58.2%), erythromycin and azithromycin (36/79, 45.6%), telithromycin (32/79, 40.5%) and clindamycin (18/79, 22.8%). All human and retail meat isolates were susceptible to florfenicol.

conclusionsThis study demonstrated that several new aminoglycoside resistance genes underlie the recent emergence of gentamicin-resistant Campylobacter, and that, in addition to contaminated retail chicken, other sources have also contributed to gentamicin-resistant Campylobacter infections in humans.

Indexed as

Drug Resistance, BacterialAnimalsAnti-Bacterial AgentsCampylobacter coliCampylobacter InfectionsCampylobacter jejuniChickensDNA, BacterialElectrophoresis, Gel, Pulsed-FieldGenes, BacterialGenome, BacterialGentamicinsHumansMeatMolecular TypingPolymerase Chain ReactionAnti-Bacterial AgentsDNA, BacterialGentamicinsCampylobactergentamicin resistanceNARMSPCRWGS

Identifiers

PMID25645207
PMCPMC11350565
OpenAlexW2140673375

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.