Evidence map›Paper›PMID 25645104›Full record

ArticleProtein science : a publication of the Protein Society2015

Aromatic cluster mutations produce focal modulations of β-sheet structure.

Matthew Biancalana, Koki Makabe, Shude Yan, Shohei Koide

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.2field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 15 citations in OpenAlex.

  1. Mitochondrial genome ofFrontiers in plant science · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Matthew BiancalanaDepartment of Biochemistry and Molecular Biology, The University of Chicago, 929 East 57th Street, Chicago, Illinois, 60637.
Koki Makabe
Shude Yan
Shohei Koide
University of Chicago · USInstitute for Molecular Science · JP

Funding

Re-Engineering Translational Research at the University of ChicagoUL1TR000430 · NCATS · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2012 to 2016
$20.2M
Chaperone Assisted CrystallographyR01GM072688 · NIGMS · UNIVERSITY OF CHICAGO · PI KOSSIAKOFF, ANTHONY A · 2005 to 2012
$2.7M
Undergraduate Training Program in Chemical & Physical B*T90DK070076 · NIDDK · UNIVERSITY OF CHICAGO · PI KRON, STEPHEN J. · 2006 to 2007
$550k
NCATS NIH HHS UL1 TR000430NCI NIH HHS Y1-CO-1020NIDDK NIH HHS T90-DK070076NIGMS NIH HHS R01-GM72688NIGMS NIH HHS Y1-GM-1104
6 · The paper itself

Abstract

Site-directed mutagenesis is a powerful tool for altering the structure and function of proteins in a focused manner. Here, we examined how a model β-sheet protein could be tuned by mutation of numerous surface-exposed residues to aromatic amino acids. We designed these aromatic side chain "clusters" at highly solvent-exposed positions in the flat, single-layer β-sheet of Borrelia outer surface protein A (OspA). This unusual β-sheet scaffold allows us to interrogate the effects of these mutations in the context of well-defined structure but in the absence of the strong scaffolding effects of globular protein architecture. We anticipated that the introduction of a cluster of aromatic amino acid residues on the β-sheet surface would result in large conformational changes and/or stabilization and thereby provide new means of controlling the properties of β-sheets. Surprisingly, X-ray crystal structures revealed that the introduction of aromatic clusters produced only subtle conformational changes in the OspA β-sheet. Additionally, despite burying a large degree of hydrophobic surface area, the aromatic cluster mutants were slightly less stable than the wild-type scaffold. These results thereby demonstrate that the introduction of aromatic cluster mutations can serve as a means for subtly modulating β-sheet conformation in protein design.

Indexed as

Protein Structure, SecondaryAmino Acids, AromaticAntigens, SurfaceBacterial Outer Membrane ProteinsBacterial VaccinesBorreliaBorrelia InfectionsCrystallography, X-RayHumansLipoproteinsMutagenesis, Site-DirectedMutationAmino Acids, AromaticAntigens, SurfaceBacterial Outer Membrane ProteinsBacterial VaccinesLipoproteinsOspA proteinbeta-sheet formationconformational stabilityprotein designsecondary structure

Identifiers

PMID25645104
PMCPMC4420532
OpenAlexW2162048377

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.