Evidence map›Paper›PMID 25644994›Full record

ArticleScientific reports2015

Drug target optimization in chronic myeloid leukemia using innovative computational platform.

Ryan Chuang, Benjamin A Hall, David Benque, Byron Cook, Samin Ishtiaq, Nir Piterman, Alex Taylor, Moshe Vardi, Steffen Koschmieder, Berthold Gottgens and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Ryan ChuangDepartment of Applied Mathematics and Theoretical Physics, University of Cambridge, Cambridge CB3 0WA, UK.
Benjamin A Hall1] Microsoft Research, Cambridge CB1 2FB, UK [2] MRC Cancer Unit, University of Cambridge, Cambridge, CB2 0XZ, UK.
David BenqueMicrosoft Research, Cambridge CB1 2FB, UK.
Byron Cook1] Microsoft Research, Cambridge CB1 2FB, UK [2] Department of Computer Science, University College London, London, WC1E 6BT, UK.
Samin IshtiaqMicrosoft Research, Cambridge CB1 2FB, UK.
Nir PitermanDepartment of Computer Science, University of Leicester, Leicester, LE1 7RH, UK.
Alex TaylorMicrosoft Research, Cambridge CB1 2FB, UK.
Moshe VardiDepartment of Computer Science, Rice University, Huston 77005-1892, Texas.
Steffen KoschmiederDepartment of Medicine, University Hospital of Aachen, Aachen D-52074, Germany.
Berthold Gottgens1] Cambridge Institute for Medical Research, University of Cambridge, Cambridge CB2 0XY, UK [2] Wellcome Trust and MRC Cambridge Stem Cell Institute, Cambridge CB2 0XY, UK.
Jasmin Fisher1] Microsoft Research, Cambridge CB1 2FB, UK [2] Department of Biochemistry, University of Cambridge, Cambridge CB2 1GA, UK.
Microsoft Research (United Kingdom) · GBUniversity of Cambridge · GBRice University · USUniversitätsklinikum Aachen · DEUniversity of Leicester · GB

Funding

Cancer Research UK 12765Medical Research Council MC_PC_12009Medical Research Council MC_UU_12022/9Wellcome Trust 97922
6 · The paper itself

Abstract

Chronic Myeloid Leukemia (CML) represents a paradigm for the wider cancer field. Despite the fact that tyrosine kinase inhibitors have established targeted molecular therapy in CML, patients often face the risk of developing drug resistance, caused by mutations and/or activation of alternative cellular pathways. To optimize drug development, one needs to systematically test all possible combinations of drug targets within the genetic network that regulates the disease. The BioModelAnalyzer (BMA) is a user-friendly computational tool that allows us to do exactly that. We used BMA to build a CML network-model composed of 54 nodes linked by 104 interactions that encapsulates experimental data collected from 160 publications. While previous studies were limited by their focus on a single pathway or cellular process, our executable model allowed us to probe dynamic interactions between multiple pathways and cellular outcomes, suggest new combinatorial therapeutic targets, and highlight previously unexplored sensitivities to Interleukin-3.

Indexed as

AlgorithmsApoptosisbcl-X ProteinComputational BiologyComputer SimulationFusion Proteins, bcr-ablGene Knockout TechniquesGene Regulatory NetworksHumansImatinib MesylateInterleukin-3Interleukin-6Interleukin-6 InhibitorsLeukemia, Myelogenous, Chronic, BCR-ABL PositiveModels, Biologicalras Proteinsbcl-X ProteinFusion Proteins, bcr-ablImatinib MesylateInterleukin-3Interleukin-6Interleukin-6 Inhibitorsras Proteins

Identifiers

PMID25644994
PMCPMC4650822
OpenAlexW2108129909

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.