Evidence map›Paper›PMID 25644604›Full record

ArticleGenes & development2015

PRDM16 binds MED1 and controls chromatin architecture to determine a brown fat transcriptional program.

Matthew J Harms, Hee-Woong Lim, Yugong Ho, Suzanne N Shapira, Jeff Ishibashi, Sona Rajakumari, David J Steger, Mitchell A Lazar, Kyoung-Jae Won, Patrick Seale

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 111 papers.

0numbers the graph read from it
0cells of the map it votes in
111citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

111 citing papers in PubMed, 145 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
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  6. Article
  7. Review
  8. Article
  9. Article
  10. PRDM16 Reduces Cellular Senescence by Upregulating GSTM1.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  11. Article
  12. Article
  13. Article
  14. The TBLR1/TBL1 Co-Factor Complex Acts as a Transcriptional Checkpoint in the Brown Adipose Tissue Response to Prolonged Cold Exposure.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
    Article
  15. Review
  16. iScience · 2025
    Article
  17. ETS emerges to heat up adipose.Genes & development · 2025
    Article
  18. Article
  19. Article
  20. Article

51 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Matthew J HarmsInstitute for Diabetes, Obesity, and Metabolism, Department of Cell and Developmental Biology.
Hee-Woong LimInstitute for Diabetes, Obesity, and Metabolism, Genetics Department, Smilow Center for Translational Research, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Yugong HoGenetics Department, Smilow Center for Translational Research, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA sealep@upenn.edu wonk@upenn.edu.
Suzanne N ShapiraInstitute for Diabetes, Obesity, and Metabolism, Department of Cell and Developmental Biology.
Jeff IshibashiInstitute for Diabetes, Obesity, and Metabolism, Department of Cell and Developmental Biology.
Sona RajakumariInstitute for Diabetes, Obesity, and Metabolism, Department of Cell and Developmental Biology.
David J StegerInstitute for Diabetes, Obesity, and Metabolism.
Mitchell A LazarInstitute for Diabetes, Obesity, and Metabolism.
Kyoung-Jae WonInstitute for Diabetes, Obesity, and Metabolism, Genetics Department, Smilow Center for Translational Research, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Patrick SealeInstitute for Diabetes, Obesity, and Metabolism, Department of Cell and Developmental Biology, sealep@upenn.edu wonk@upenn.edu.
University of Pennsylvania · USInstitute of Nutrition, Metabolism and Diabetes · CA

Funding

VIRAL VECTOR COREP30DK019525 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI MITCHELL A. LAZAR · 1986 to 2026
$48.3M
ZINC FINGER PROTEINS IN EARLY KIDNEY DEVELOPMENTP01DK049210 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI AHIMA, REXFORD S. · 1995 to 2016
$26.9M
Nuclear Receptors in Metabolic TissuesR01DK049780 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI LAZAR, MITCHELL A. · 1995 to 2025
$10.8M
PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM008216 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI EPSTEIN, DOUGLAS J · 1987 to 2023
$8.3M
Molecular Regulation of Brown Adipose Cell Fate in Somitic Stem CellsDP2OD007288 · OD · UNIVERSITY OF PENNSYLVANIA · PI SEALE, PATRICK · 2010 to 2010
$2.4M
An Integrative Approach to Construct a Regulatory Network Effected by TDZsR21DK098769 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI WON, KYOUNG JAE · 2013 to 2014
$440k
NIDDK NIH HHS DK19525NIDDK NIH HHS P01 DK049210NIDDK NIH HHS P30 DK019525NIDDK NIH HHS R01 DK049780NIDDK NIH HHS R01 DK49780NIDDK NIH HHS R21 DK098769NIDDK NIH HHS R21DK098769NIGMS NIH HHS T32 GM008216NIH HHS DP2 OD007288NIH HHS DP2OD007288
6 · The paper itself

Abstract

PR (PRD1-BF1-RIZ1 homologous) domain-containing 16 (PRDM16) drives a brown fat differentiation program, but the mechanisms by which PRDM16 activates brown fat-selective genes have been unclear. Through chromatin immunoprecipitation (ChIP) followed by deep sequencing (ChIP-seq) analyses in brown adipose tissue (BAT), we reveal that PRDM16 binding is highly enriched at a broad set of brown fat-selective genes. Importantly, we found that PRDM16 physically binds to MED1, a component of the Mediator complex, and recruits it to superenhancers at brown fat-selective genes. PRDM16 deficiency in BAT reduces MED1 binding at PRDM16 target sites and causes a fundamental change in chromatin architecture at key brown fat-selective genes. Together, these data indicate that PRDM16 controls chromatin architecture and superenhancer activity in BAT.

Indexed as

Adipose Tissue, BrownAnimalsChromatinDNA-Binding ProteinsEnhancer Elements, GeneticMediator Complex Subunit 1MiceTranscription FactorsTranscription, GeneticChromatinDNA-Binding ProteinsMed1 protein, mouseMediator Complex Subunit 1Prdm16 protein, mouseTranscription Factorsbrown adipose tissueMED1MediatorPRDM16PRDM3UCP1

Identifiers

PMID25644604
PMCPMC4318146
OpenAlexW2165504342

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.