Evidence map›Paper›PMID 25644173›Full record

ArticleMolecular cancer2015

Genome-wide analyses identify KLF4 as an important negative regulator in T-cell acute lymphoblastic leukemia through directly inhibiting T-cell associated genes.

Wei Li, Zhiwu Jiang, Tianzhong Li, Xinru Wei, Yi Zheng, Donghai Wu, Lijian Yang, Shaohua Chen, Bing Xu, Mei Zhong and 13 more

Open access · goldAbstract read
In one paragraph

Article in Molecular cancer, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 42 citations in OpenAlex.

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  19. Systems biology analysis of longitudinal functional response of endothelial cells to shear stress.Proceedings of the National Academy of Sciences of the United States of America · 2017
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 8 institutions in 2 countries.

Wei LiKey Laboratory of Regenerative Biology, South China Institute for Stem Cell Biology and Regenerative Medicine, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, 190 Kaiyuan Avenue, Science Park, Guangzhou, Guangdong, 510530, China. li_wei2011@gibh.ac.cn.
Zhiwu JiangKey Laboratory of Regenerative Biology, South China Institute for Stem Cell Biology and Regenerative Medicine, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, 190 Kaiyuan Avenue, Science Park, Guangzhou, Guangdong, 510530, China. jiang_zhiwu@gibh.ac.cn.
Tianzhong LiKey Laboratory of Regenerative Biology, South China Institute for Stem Cell Biology and Regenerative Medicine, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, 190 Kaiyuan Avenue, Science Park, Guangzhou, Guangdong, 510530, China. li_tianzhong@gibh.ac.cn.
Xinru WeiKey Laboratory of Regenerative Biology, South China Institute for Stem Cell Biology and Regenerative Medicine, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, 190 Kaiyuan Avenue, Science Park, Guangzhou, Guangdong, 510530, China. wei_xinru@gibh.ac.cn.
Yi ZhengKey Laboratory of Regenerative Biology, South China Institute for Stem Cell Biology and Regenerative Medicine, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, 190 Kaiyuan Avenue, Science Park, Guangzhou, Guangdong, 510530, China. zheng_yi@gibh.ac.cn.
Donghai WuKey Laboratory of Regenerative Biology, South China Institute for Stem Cell Biology and Regenerative Medicine, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, 190 Kaiyuan Avenue, Science Park, Guangzhou, Guangdong, 510530, China. wu_donghai@gibh.ac.cn.
Lijian YangInstitute of Hematology, Medical College, Jinan University, Guangzhou, 510632, China. jnyanglijian@163.com.
Shaohua ChenInstitute of Hematology, Medical College, Jinan University, Guangzhou, 510632, China. jnshaohuachen@163.com.
Bing XuDepartment of Hematology, Nanfang Hospital, Southern Medical University, 510515, Guangzhou, China. xubingzhangjian@126.com.
Mei ZhongDepartment of Obstetrics and Gynecology, Nan Fang Hospital of Southern Medical University, Guangzhou, 510515, China. zhongmei@fimmu.com.
Jue JiangSchool of Pharmacy, Tongji Medical College, Huazhong Unviersity of Science and Technology, 13 Hangkong Road, Wuhan, 430030, China. jiang1@hotmail.com.
Yufeng HuSchool of Pharmacy, Tongji Medical College, Huazhong Unviersity of Science and Technology, 13 Hangkong Road, Wuhan, 430030, China. yufenghu@hust.edu.cn.
Hexiu SuSchool of Pharmacy, Tongji Medical College, Huazhong Unviersity of Science and Technology, 13 Hangkong Road, Wuhan, 430030, China. suhexiu@hust.edu.cn.
Minjie ZhangShenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, 1068 Xueyuan Avenue, Shenzhen University Town, Shenzhen, 518055, China. minjie.zhang@gmail.com.
Xiaojun HuangPeking University People's Hospital, Peking University Institute of Hematology, No. 11 Xizhimen South St., Beijing, 100044, China. xjhrm@medmail.com.cn.
Suxia GengDepartment of Hematology, Guangdong Provincial People's Hospital, Guangzhou, 510500, China. gsx76@126.com.
Jianyu WengDepartment of Hematology, Guangdong Provincial People's Hospital, Guangzhou, 510500, China. wsswjy@sina.com.
Xin DuDepartment of Hematology, Guangdong Provincial People's Hospital, Guangzhou, 510500, China. miyadu@hotmail.com.
Pentao LiuWellcome Trust Sanger Institute, Hinxton, Cambridge, CB10 1HH, England, UK. pl2@sanger.ac.uk.
Yangqiu LiInstitute of Hematology, Medical College, Jinan University, Guangzhou, 510632, China. yangqiuli@hotmail.com.
Hudan LiuSchool of Pharmacy, Tongji Medical College, Huazhong Unviersity of Science and Technology, 13 Hangkong Road, Wuhan, 430030, China. hudanliu@hust.edu.cn.
Yao YaoDrug Discovery Pipeline, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, 190 Kaiyuan Avenue, Science Park, Guangzhou, Guangdong, 510530, China. yao_yao@gibh.ac.cn.
Peng LiKey Laboratory of Regenerative Biology, South China Institute for Stem Cell Biology and Regenerative Medicine, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, 190 Kaiyuan Avenue, Science Park, Guangzhou, Guangdong, 510530, China. li_peng@gibh.ac.cn.
Chinese Academy of Sciences · CNGuangzhou Institutes of Biomedicine and Health · CNHuazhong University of Science and Technology · CNGuangdong Provincial People's Hospital · CNJinan University · CNSouthern Medical University · CNPeking University · CNWellcome Sanger Institute · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundKruppel-like factor 4 (KLF4) induces tumorigenesis or suppresses tumor growth in a tissue-dependent manner. However, the roles of KLF4 in hematological malignancies and the mechanisms of action are not fully understood.

methodsInducible KLF4-overexpression Jurkat cell line combined with mouse models bearing cell-derived xenografts and primary T-cell acute lymphoblastic leukemia (T-ALL) cells from four patients were used to assess the functional role of KLF4 in T-ALL cells in vitro and in vivo. A genome-wide RNA-seq analysis was conducted to identify genes regulated by KLF4 in T-ALL cells. Chromatin immunoprecipitation (ChIP) PCR was used to determine direct binding sites of KLF4 in T-ALL cells.

resultsHere we reveal that KLF4 induced apoptosis through the BCL2/BCLXL pathway in human T-ALL cell lines and primary T-ALL specimens. In consistence, mice engrafted with KLF4-overexpressing T-ALL cells exhibited prolonged survival. Interestingly, the KLF4-induced apoptosis in T-ALL cells was compromised in xenografts but the invasion capacity of KLF4-expressing T-ALL cells to hosts was dramatically dampened. We found that KLF4 overexpression inhibited T cell-associated genes including NOTCH1, BCL11B, GATA3, and TCF7. Further mechanistic studies revealed that KLF4 directly bound to the promoters of NOTCH1, BCL2, and CXCR4 and suppressed their expression. Additionally, KLF4 induced SUMOylation and degradation of BCL11B.

conclusionsThese results suggest that KLF4 as a major transcription factor that suppresses the expression of T-cell associated genes, thus inhibiting T-ALL progression.

Indexed as

Gene Expression Regulation, LeukemicGenome-Wide Association StudyAnimalsApoptosisbcl-X ProteinCluster AnalysisDisease Models, AnimalDisease ProgressionDown-RegulationGene ExpressionGene Expression ProfilingHeterograftsHumansJurkat CellsKruppel-Like Factor 4Kruppel-Like Transcription FactorsBCL11B protein, humanBCL2L1 protein, humanbcl-X ProteinKLF4 protein, humanKlf4 protein, mouseKruppel-Like Factor 4Kruppel-Like Transcription FactorsProto-Oncogene Proteins c-bcl-2Repressor ProteinsTumor Suppressor Proteins

Identifiers

PMID25644173
PMCPMC4350611
OpenAlexW2109981081

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.