Evidence map›Paper›PMID 25643792›Full record

ArticleJournal of veterinary science2015

Phylogeography of the current rabies viruses in Indonesia.

I Nyoman Dibia, Bambang Sumiarto, Heru Susetya, Anak Agung Gde Putra, Helen Scott-Orr, Gusti Ngurah Mahardika

Abstract read
In one paragraph

Article in Journal of veterinary science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
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  3. Review
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  7. Review
  8. Article
  9. Article
  10. Article
  11. Lessons for rabies control and elimination programmes: a decade of One Health experience from Bali, Indonesia.Revue scientifique et technique (International Office of Epizootics) · 2019
    Review
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

I Nyoman DibiaAnimal Disease Investigation Centre, Denpasar 80226, Indonesia.
Bambang SumiartoVeterinary Public Health Department, Faculty of Veterinary Medicine, Gajah Mada University, Yogyakarta 55281, Indonesia.
Heru SusetyaVeterinary Public Health Department, Faculty of Veterinary Medicine, Gajah Mada University, Yogyakarta 55281, Indonesia.
Anak Agung Gde PutraAnimal Disease Investigation Centre, Denpasar 80226, Indonesia.
Helen Scott-OrrFaculty of Veterinary Science, University of Sydney, Camden 2570, Australia.
Gusti Ngurah MahardikaThe Animal Biomedical and Molecular Biology Laboratory, Faculty of Veterinary Medicine, Udayana University, Denpasar 80226, Indonesia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rabies is a major fatal zoonotic disease in Indonesia. This study was conducted to determine the recent dynamics of rabies virus (RABV) in various areas and animal species throughout Indonesia. A total of 27 brain samples collected from rabid animals of various species in Bali, Sumatra, Kalimantan, Sulawesi, Java, and Flores in 2008 to 2010 were investigated. The cDNA of the nucleoprotein gene from each sample was generated and amplified by one-step reverse transcription-PCR, after which the products were sequenced and analyzed. The symmetric substitution model of a Bayesian stochastic search variable selection extension of the discrete phylogeographic model of the social network was applied in BEAST ver. 1.7.5 software. The spatial dispersal was visualized in Cartographica using Spatial Phylogenetic Reconstruction of Evolutionary Dynamics. We demonstrated inter-island introduction and reintroduction, and dog was found to be the only source of infection of other animals. Ancestors of Indonesian RABVs originated in Java and its descendants were transmitted to Kalimantan, then further to Sumatra, Flores, and Bali. The Flores descendent was subsequently transmitted to Sulawesi and back to Kalimantan. The viruses found in various animal species were transmitted by the dog.

Indexed as

PhylogenyAnimalsIndonesiaMolecular Sequence DataNucleocapsid ProteinsPhylogeographyRabiesRabies virusSequence Analysis, DNAnucleocapsid protein, Rabies virusNucleocapsid ProteinsIndonesiaphylogeographyrabies virus

Identifiers

PMID25643792
PMCPMC4701738

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.