ArticleInternational journal of molecular sciences2015
Transcriptome analysis of methyl jasmonate-elicited Panax ginseng adventitious roots to discover putative ginsenoside biosynthesis and transport genes.
Article in International journal of molecular sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers, 1 of them a synthesis that pooled it.
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Who cites it
36 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Leveraging next-generation sequencing technology for the study of ginsenosides biosynthesis and exploring DNA markers in the endemic species Panax vietnamensis.Molecular biology reports · 2024Pooled it
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- Comprehensive Candidate Gene for Ginsenoside Rg1 Biosynthesis: Identification, Systematic Analysis, and Verification.Plants (Basel, Switzerland) · 2026Article
- Programmable saponin biosynthesis from gene networks to predictive biomanufacturing.Frontiers in plant science · 2026Review
- Functional Study ofPlants (Basel, Switzerland) · 2025Article
- Single-cell sequencing and mass spectrometry imaging reveal the multicellular compartmentalization map of plant triterpenes: A ginsenoside in Panax ginseng example.Plant biotechnology journal · 2025Article
- Transcriptomic Analysis Under Drought and Salt Stress Provides Insight into Genes Putatively Involved in Ginsenoside Biosynthesis in Panax japonicus Meyer.Biochemical genetics · 2025Article
- Transcriptomic data reveals the dynamics of terpenoids biosynthetic pathway of fenugreek.BMC genomics · 2024Article
- Heterologous biosynthesis of medicarpin using engineeredSynthetic and systems biotechnology · 2023Article
- Genetic and molecular dissection of ginseng (Frontiers in plant science · 2023Article
- Transcriptome and Phenotype Integrated Analysis Identifies Genes Controlling Ginsenoside Rb1 Biosynthesis and Reveals Their Interactions in the Process inInternational journal of molecular sciences · 2022Article
- Genome-wide identification and transcriptional profiling analysis ofChinese herbal medicines · 2022Article
- Biosyntheses characterization of alkaloids and flavonoids in Sophora flavescens by combining metabolome and transcriptome.Scientific reports · 2021Article
- Two Key Amino Acids Variant of α-l-arabinofuranosidase fromMolecules (Basel, Switzerland) · 2021Article
- Transcriptomic and Metabolomic Differences Between TwoFrontiers in bioengineering and biotechnology · 2021Article
- Hairy root culture technology: applications, constraints and prospect.Applied microbiology and biotechnology · 2021Review
- De novo assembly and Transcriptome characterization of an endemic species of Vietnam, Panax vietnamensis Ha et Grushv., including the development of EST-SSR markers for population genetics.BMC plant biology · 2020Article
- Transcriptome analysis ofJournal of ginseng research · 2020Article
- NAA and 6-BA promote accumulation of oleanolic acid by JA regulation in Achyranthes bidentata Bl.PloS one · 2020Article
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13 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The Panax ginseng C.A. Meyer belonging to the Araliaceae has long been used as an herbal medicine. Although public databases are presently available for this family, no methyl jasmonate (MeJA) elicited transcriptomic information was previously reported on this species, with the exception of a few expressed sequence tags (ESTs) using the traditional Sanger method. Here, approximately 53 million clean reads of adventitious root transcriptome were separately filtered via Illumina HiSeq™2000 from two samples treated with MeJA (Pg-MeJA) and equal volumes of solvent, ethanol (Pg-Con). Jointly, a total of 71,095 all-unigenes from both samples were assembled and annotated, and based on sequence similarity search with known proteins, a total of 56,668 unigenes was obtained. Out of these annotated unigenes, 54,920 were assigned to the NCBI non-redundant protein (Nr) database, 35,448 to the Swiss-prot database, 43,051 to gene ontology (GO), and 19,986 to clusters of orthologous groups (COG). Searching in the Kyoto encyclopedia of genes and genomes (KEGG) pathway database indicated that 32,200 unigenes were mapped to 128 KEGG pathways. Moreover, we obtained several genes showing a wide range of expression levels. We also identified a total of 749 ginsenoside biosynthetic enzyme genes and 12 promising pleiotropic drug resistance (PDR) genes related to ginsenoside transport.
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