Evidence map›Paper›PMID 25642227›Full record

ArticleFrontiers in microbiology2014

Effect of polybrominated diphenyl ether (PBDE) treatment on the composition and function of the bacterial community in the sponge Haliclona cymaeformis.

Ren-Mao Tian, On On Lee, Yong Wang, Lin Cai, Salim Bougouffa, Jill Man Ying Chiu, Rudolf Shiu Sun Wu, Pei-Yuan Qian

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Ren-Mao TianDivison of Life Science, The Hong Kong University of Science and Technology Hong Kong, China.
On On LeeDivison of Life Science, The Hong Kong University of Science and Technology Hong Kong, China.
Yong WangDivison of Life Science, The Hong Kong University of Science and Technology Hong Kong, China.
Lin CaiDivison of Life Science, The Hong Kong University of Science and Technology Hong Kong, China.
Salim BougouffaDivison of Life Science, The Hong Kong University of Science and Technology Hong Kong, China.
Jill Man Ying ChiuDepartment of Biology, Hong Kong Baptist University Hong Kong, China.
Rudolf Shiu Sun WuSchool of Biological Sciences, The University of Hong Kong Hong Kong, China ; State Key Laboratory of Marine Pollution, The City University of Hong Kong Hong Kong, China.
Pei-Yuan QianDivison of Life Science, The Hong Kong University of Science and Technology Hong Kong, China ; State Key Laboratory of Marine Pollution, The City University of Hong Kong Hong Kong, China.
Hong Kong University of Science and Technology · HKCity University of Hong Kong · HKHong Kong Baptist University · HK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Marine sponges play important roles in benthic environments and are sensitive to environmental stresses. Polybrominated diphenyl ethers (PBDEs) have been widely used as flame retardants since the 1970s and are cytotoxic and genotoxic to organisms. In the present study, we studied the short-period effect of PBDE-47 (2,2',4,4'-tetrabromodiphenyl ether) treatment on the community structure and functional gene composition of the bacterial community inhabiting the marine sponge Haliclona cymaeformis. Our results showed that the bacterial community shifted from an autotrophic bacteria-dominated community to a heterotrophic bacteria-dominated community in response to PBDE-47 in a time- and concentration-dependent manner. A potentially symbiotic sulfur-oxidizing bacterium (SOB) was dominant (>80% in abundance) in the untreated sponge. However, exposure to a high concentration (1 μg/L) of PBDE-47 caused a substantial decrease in the potential symbiont and an enrichment of heterotrophic bacteria like Clostridium. A metagenomic analysis showed a selective effect of the high concentration treatment on the functional gene composition of the enriched heterotrophic bacteria, revealing an enrichment for the functions responsible for DNA repair, multidrug efflux pumping, and bacterial chemotaxis and motility. This study demonstrated that PBDE-47 induced a shift in the composition of the community and functional genes in the sponge-associated bacterial community, revealing the selective effect of PBDE-47 treatment on the functions of the bacterial community in the microenvironment of the sponge.

Indexed as

16S rRNA gene pyrosequencingmetagenomicsPBDEssponge-associated bacterial communitysymbionts

Identifiers

PMID25642227
PMCPMC4294214
OpenAlexW2073803109

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.