Evidence map›Paper›PMID 25641679›Full record

ArticleNature communications2015

A high-throughput optomechanical retrieval method for sequence-verified clonal DNA from the NGS platform.

Howon Lee, Hyoki Kim, Sungsik Kim, Taehoon Ryu, Hwangbeom Kim, Duhee Bang, Sunghoon Kwon

Abstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Cell-Free DNA-Based Theranostics for Inflammatory Disorders.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
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  5. High-throughputSTAR protocols · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Howon LeeInstitutes of Entrepreneurial BioConvergence, Seoul National University, Seoul 151-742, Republic of Korea.
Hyoki KimCelemics Inc., 371-17, Gasan-dong, Geumcheon-gu, Seoul 153-718, Republic of Korea.
Sungsik Kim1] Institutes of Entrepreneurial BioConvergence, Seoul National University, Seoul 151-742, Republic of Korea [2] Interdisciplinary Program for Bioengineering, Seoul National University, Seoul 151-744, Republic of Korea.
Taehoon Ryu1] Institutes of Entrepreneurial BioConvergence, Seoul National University, Seoul 151-742, Republic of Korea [2] Department of Electrical Engineering and Computer Science, Seoul National University, Seoul 151-744, Republic of Korea.
Hwangbeom KimDepartment of Chemistry and Biochemistry, University of California, Los Angeles, California 90095-1569, USA.
Duhee BangDepartment of Chemistry, Yonsei University, Seoul 120-749, Republic of Korea.
Sunghoon Kwon1] Institutes of Entrepreneurial BioConvergence, Seoul National University, Seoul 151-742, Republic of Korea [2] Department of Electrical Engineering and Computer Science, Seoul National University, Seoul 151-744, Republic of Korea [3] Center for Nanoparticle Research, Institute for Basic Science, Seoul National University, Seoul 151-742, Republic of Korea [4] Seoul National University Hospital Biomedical Research Institute 101 Daehakro, Chungrogu, Seoul National University Hospital, Seoul 110-744, Republic of Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Writing DNA plays a significant role in the fields of synthetic biology, functional genomics and bioengineering. DNA clones on next-generation sequencing (NGS) platforms have the potential to be a rich and cost-effective source of sequence-verified DNAs as a precursor for DNA writing. However, it is still very challenging to retrieve target clonal DNA from high-density NGS platforms. Here we propose an enabling technology called 'Sniper Cloning' that enables the precise mapping of target clone features on NGS platforms and non-contact rapid retrieval of targets for the full utilization of DNA clones. By merging the three cutting-edge technologies of NGS, DNA microarray and our pulse laser retrieval system, Sniper Cloning is a week-long process that produces 5,188 error-free synthetic DNAs in a single run of NGS with a single microarray DNA pool. We believe that this technology has potential as a universal tool for DNA writing in biological sciences.

Indexed as

DNAHigh-Throughput Nucleotide SequencingHumansOligonucleotide Array Sequence AnalysisSequence Analysis, DNADNA

Identifiers

PMID25641679
PMCPMC4327316

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.